Job Description P21169 Confidence 99.67% Date Thu Jan 5 11:37:54 GMT 2012 Rank 152 Aligned Residues 317 % Identity 16% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		168	.	170	.	.	.	.	.	.	.	.	.							180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure														.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.
Query Sequence		A	K	D	A	Q	K	F	A	A	K	V	F	.	.	.	.	.	.	H	A	D	K	T	Y	F	V	L	N	G	T	S	A	A	N	K	V	V	T	N	A	L	L	T	R	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	I	Q	A	G	A	T	P	V	Y	L	E	A	S	R	N	P	F
Query Conservation														.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																																											.
Template Conservation																																																														.
Template Sequence		I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T	G	G	I	H	H	L	I	H	N	Y	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	.	I	C	S	D	T	G	R	T	L	V	T	Y	S	L	F	D	E	H	N
Template Known Secondary structure															G	G	G			S	S								S														S		T	T							S	S			T					.					T	T								S	B		T	T	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.										300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																												.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	I	G	G	I	D	A	H	C	F	N	E	E	Y	L	R	Q	Q	I	R	D	V	A	P	E	K	A	D	L	P	R	P	Y	R	L	A	I	I	Q	L	G	.	.	T	Y	D	G	T	V	Y	N	A	R	Q	V	I	D	T	V	.	.	.	.	.	.	.	.	.	G	H	L	C	D	Y	I	L	F	D	S
Query Conservation																																												.	.																	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.													.	.	.	.	.															.	.																	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Sequence		N	F	.	.	.	.	.	.	.	.	.	N	H	E	A	F	Q	N	R	V	N	E	L	.	.	.	.	.	A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T	G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V
Template Known Secondary structure		S	B	.	.	.	.	.	.	.	.	.													.	.	.	.	.					S									S	S		T	T	T																						T	S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template SS confidence
		158	.										160	.	.	.	.	.	.	.	.	.	170	.						.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		A	W	V	G	Y	E	Q	F	I	P	M	M	A	D	S	S	P	L	L	L	E	L	N	E	N	D	P	G	I	F	V	T	Q	S	V	H	K	Q	Q	.	.	A	G	F	S	Q	T	S	Q	I	H	K	K	D	N	H	I	R	G	Q	A	R	F	C	P	H	K	R	L	N	N	A	F	M	L	H	A	S	T	S
Query Conservation																																									.	.
Alig confidence								.																																	.	.																.	.	.	.	.	.	.
Template Conservation								.																																																		.	.	.	.	.	.	.
Template Sequence		A	Y	L	D	Y	S	.	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T	C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	.	.	.	.	.	.	.	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T
Template Known Secondary structure		T	T	G	G	G	S	.	S							G	G	G	G	G	G	T	T			T	T									S	T	T	T	T	T			S	S										S	S		.	.	.	.	.	.	.
Template Predicted Secondary structure								.																																																		.	.	.	.	.	.	.
Template SS confidence
		224	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.								.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	Y	P	L	F	A	A	L	D	V	N	A	K	I	H	E	G	E	S	G	R	R	L	W	A	E	C	V	E	I	G	I	E	A	R	K	A	I	L	A	R	C	K	L	F	R	P	F	I	P	P	V	V	D	G	K	L	W	Q	D	Y	P	T	S	V	L	A	S	D	R	R	F	F	S	F	E	P	G	A
Query Conservation
Alig confidence																			.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	.	.	.	D	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I	R	D	R	A	D	I	F	K	Q	E	A	A	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S	S														T	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	W	H	G	F	E	G	Y	A	A	D	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	E	T	G	E	Y	S	D	F	G	V	P	A	T	I	L	A	H	Y	L	R	E	N	G	I	V	P	E	K	C	D	L	N	S	I	L	F	L	L	T	P	A	E	S	H	E	K	L	A	Q	L	V
Query Conservation
Alig confidence		.	.	.													.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.													.
Template Conservation		.	.	.													.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.													.
Template Sequence		.	.	.	G	L	P	X	L	P	Y	R	G	G	F	F	.	.	.	.	I	T	I	P	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	.	I	A	L	A	N	G	I	R	I	A	A	C	.	G	I	P	K	C	Q	X	T	G	L	A
Template Known Secondary structure		.	.	.	T								S	S	S		.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T											T	T				.				S	S						G	G	.	G	S						T	T
Template Predicted Secondary structure		.	.	.													.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.													.
Template SS confidence
					346	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.															.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.
		549	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	L	A	Q	F	E	Q	H	I	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	I	Y	N	A	X	K	S	L	G	K
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions