Job Description P21169 Confidence 99.35% Date Thu Jan 5 11:37:54 GMT 2012 Rank 220 Aligned Residues 302 % Identity 12% Template c3pplB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Resolution 1.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		168	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.															.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	D	A	Q	K	F	A	A	K	V	F	H	A	.	D	K	T	Y	F	V	L	N	G	T	S	A	A	N	K	V	V	T	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	T	R	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	I	Q	A	G	A	T	P	V
Query Conservation																.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																																																							.
Template Sequence		I	V	D	I	R	Q	I	W	A	D	L	L	G	V	P	V	E	Q	V	L	A	G	D	A	S	S	L	N	I	X	F	D	V	I	S	W	S	Y	I	F	G	N	N	D	S	V	Q	P	W	S	K	E	E	T	V	K	W	I	C	P	V	P	G	Y	D	R	H	F	S	.	I	T	E	R	F	G	F	E	X	I
Template Known Secondary structure														T	S		G	G	G					S	S																			T	T		S	S		G	G	G	S	S									S								.					T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.				.	.	.	.	.	.		.	.	300	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.									.	.	.							.
Query SS confidence																																																					.	.	.									.	.	.							.
Query Sequence		Y	L	E	A	S	R	N	P	F	G	F	I	G	G	I	D	A	H	C	F	N	E	E	Y	L	R	Q	Q	I	R	D	V	A	P	E	K	A	D	L	P	R	P	Y	R	L	A	I	I	Q	L	G	.	.	.	T	Y	D	G	T	V	Y	N	.	.	.	A	R	Q	V	I	D	.	T	V	G	H	L	C	D	Y
Query Conservation																																																					.	.	.									.	.	.							.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.							.	.	.									.	.	.							.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	P	X	N	.	.	.	.	.	.	.	.	.	.	.	E	D	G	P	D	X	D	A	V	E	E	L	V	K	N	P	Q	V	K	.	.	.	.	.	.	.	.	.	.	G	X	W	V	V	P	V	F	S	N	P	T	G	F	T	V	T	E	D	V	A	K	R	L	S	A	X	E	T	A	A	P	D	F	R
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	T	T											T	T	S	T	T			.	.	.	.	.	.	.	.	.	.							S	S		T	T	T																		S	S	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.												.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		I	L	F	D	S	A	W	V	G	.	Y	E	Q	F	I	P	M	M	A	D	S	S	P	L	L	L	E	L	N	E	N	D	P	G	I	F	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	N	H	I	R	G	Q	A	R	F	C	P	H	K	R	L	N	N	A	F	M	L	H
Query Conservation											.
Alig confidence											.																																																			.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.
Template Sequence		V	V	W	D	N	A	Y	A	V	H	T	L	T	D	E	F	P	E	V	I	D	I	V	G	L	G	E	A	A	G	N	P	N	R	F	W	A	F	T	S	T	S	K	I	T	L	A	G	A	G	V	S	F	F	L	T	S	A	E	N	.	.	.	.	.	.	.	.	.	R	K	W	Y	T	G	H	A	G	I	R
Template Known Secondary structure							T	T	T	T		B	S	S	S															T	T		T	T								S	T	T	T	S		T	T	T	S											.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.										.	.	.	280	.	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430				.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																				.																													.	.	.
Query SS confidence																				.																													.	.	.
Query Sequence		A	S	T	S	P	F	Y	P	L	F	A	A	L	D	V	N	A	K	.	I	H	E	G	E	S	G	R	R	L	W	A	E	C	V	E	I	G	I	E	A	R	K	A	I	L	A	R	.	.	.	C	K	L	F	R	P	F	I	P	P	V	V	D	G	K	L	W	Q	D	Y	P	T	S	V	L	A	S	D	R	R
Query Conservation																				.																													.	.	.
Alig confidence																				.																													.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	G	P	N	K	V	N	Q	L	A	H	A	R	Y	F	G	D	A	E	G	V	R	A	V	X	R	K	H	A	A	S	L	A	P	K	F	N	K	V	L	E	I	L	D	S	R	L	A	E	Y	G	V	A	Q	W	T	V	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S																S																															G	G	G	T								S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.											.	.	.	.	.	.	530
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	F	S	F	E	P	G	A	K	W	H	G	F	E	G	Y	A	A	D	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	E	T	G	E	Y	S	D	F	G	V	P	A	T	I	L	A	H	Y	L	R	E	N	G	I	V	P	.	.	.	.	.	.	.	.	.	.	E	K	C	D	L	N	S
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	Y	F	I	S	L	D	V	V	.	.	.	.	.	.	.	.	.	.	.	.	P	G	T	A	S	R	V	A	E	L	A	K	E	A	G	I	A	L	T	G	A	G	S	S	Y	P	L	R	Q	D	P	E	N	K	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	S	S							S	.	.	.	.	.	.	.	.	.	.	.	.	T	T												T	T						T	T	T	T	S	G	G	G			T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																									348	.	350	.	.	.	.	.	.	.													.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	F	L	L	T	P	A	E	S	H	E	K	L	A	Q	L	V	A	M	L	A	Q	F	E	Q
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		L	R	L	A	P	S	.	L	P	P	V	E	E	L	E	V	A	X	D	G	V	A	T	C	V	L
Template Known Secondary structure							S	.	S	S
Template Predicted Secondary structure								.
Template SS confidence
		393	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions