Job Description P21169 Confidence 99.73% Date Thu Jan 5 11:37:54 GMT 2012 Rank 125 Aligned Residues 311 % Identity 13% Template c3pdxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:tyrosine aminotransferase; PDBTitle: crystal structural of mouse tyrosine aminotransferase Resolution 2.91 Å

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		169	170	.	.	.	.	.	.	.	.	.	180							.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure														.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.
Query Sequence		K	D	A	Q	K	F	A	A	K	V	F	H	.	.	.	.	.	.	A	D	K	T	Y	F	V	L	N	G	T	S	A	A	N	K	V	V	T	N	A	L	L	T	R	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	I	Q	A	G	A	T	P	V	Y	L	E	A	S	R	N	P	F	G
Query Conservation														.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																																										.
Template Conservation																																																													.
Template Sequence		L	S	S	R	E	E	V	A	S	Y	Y	H	C	P	E	A	P	L	E	A	K	D	V	I	L	T	S	G	C	S	Q	A	I	E	L	C	L	A	V	L	A	N	P	G	Q	N	I	L	I	P	R	P	G	F	S	L	Y	R	T	.	L	A	E	S	M	G	I	E	V	K	L	Y	N	L	L	P	E	K	S	W
Template Known Secondary structure												T			S	S	S				G	G	G					S	S											T	T			S	S							S	S								.						T										G	G	G	T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		F	I	G	G	I	D	A	H	C	F	N	E	E	Y	L	R	Q	Q	I	R	D	V	A	P	E	K	A	D	L	P	R	P	Y	R	L	A	I	I	Q	L	G	T	Y	.	.	.	.	D	G	T	V	Y	N	A	R	Q	V	I	D	T	V	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F
Query Conservation																																													.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.									.	.	.	.																													.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Template Sequence		E	I	.	.	.	.	.	.	.	.	D	L	K	Q	L	E	S	L	I	D	E	K	T	A	C	.	.	.	.	.	.	.	.	.	.	L	V	V	N	N	P	S	N	P	C	G	S	V	F	S	K	R	H	L	Q	K	I	L	A	V	A	E	R	Q	C	V	P	I	L	A	D	E	I	Y	G	.	.	.	.	.
Template Known Secondary structure				.	.	.	.	.	.	.	.							T	T			S	S				.	.	.	.	.	.	.	.	.	.					S	S		T	T	T																	T	T	T	T								T	T	T	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.
Template SS confidence
		195	.									.	.	.	200	.	.	.	.	.	.	.	.	.	210	.											.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	M	M	A	D	S	S	P	L	L	L	E	L	N	E	N	D	P	G	I	F	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	N	H	I	R	G	Q	A	R	F	C	P	H	K	R	L	N	N	A	F	M	L	H	A	S	T	S	P	F	Y	P	L	F	A	A	L	D
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.
Template Sequence		D	M	V	F	S	D	C	K	Y	E	P	M	A	T	L	S	T	N	V	P	I	L	S	C	G	G	L	A	R	W	L	V	P	G	W	R	L	G	W	I	L	I	H	D	R	R	.	.	.	.	.	.	.	D	I	F	G	N	E	I	R	D	G	L	V	K	L	S	Q	R	I	L	G	P	C	T	I	V	Q	G
Template Known Secondary structure		T		B		S	S	S					G	G	G	G		S	S								B					S		G	G	G										S	S	.	.	.	.	.	.	.	S	S	S													T	T	T			S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.								.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	A	K	I	H	E	G	E	S	G	R	R	L	W	A	E	C	V	E	I	G	I	E	A	R	K	A	I	L	A	R	C	K	L	F	R	P	F	I	P	P	V	V	D	G	K	L	W	Q	D	Y	P	T	S	V	L	A	S	D	R	R	F	F	S	F	E	P	G	A	K	W	H	G	F	E	G	Y	A	A
Query Conservation
Alig confidence											.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	K	S	I	L	Q	R	T	.	P	Q	E	F	Y	Q	D	T	L	S	F	L	K	S	N	A	D	L	C	Y	G	A	L	S	A	I	P	G	L	Q	P	V	R	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											.																										S	T	T	B			B				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.					.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		D	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	E	T	G	E	Y	S	D	F	G	V	P	A	T	I	L	A	H	Y	L	R	E	N	G	I	V	P	.	.	.	.	E	K	C	D	L	N	S	I	L	F	L	L	T	P	A	E	S	H	E	K	L	A	Q	L	V	A	M	L	A	Q	F
Query Conservation																																															.	.	.	.
Alig confidence		.	.	.	.	.																							.	.	.	.	.														.	.	.	.										.	.
Template Conservation		.	.	.	.	.																							.	.	.	.	.																											.	.
Template Sequence		.	.	.	.	.	G	A	M	Y	L	M	V	G	I	E	M	E	H	F	P	E	F	E	N	D	V	E	.	.	.	.	.	F	T	E	R	L	I	A	E	Q	S	V	H	C	L	P	A	T	C	F	E	Y	P	N	F	F	R	.	.	V	V	I	T	V	P	E	V	M	M	L	E	A	C	S	R	I	Q	E	F
Template Known Secondary structure		.	.	.	.	.	B	T	T						B		T	T	S			S		S	S				.	.	.	.	.																G	G	G	G	T			S				.	.			S		S
Template Predicted Secondary structure		.	.	.	.	.																							.	.	.	.	.																											.	.
Template SS confidence
							370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.						.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.			.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		555	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	E	Q	H
Template Known Secondary structure			T	T	T
Template Predicted Secondary structure
Template SS confidence
		438	.	440	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions