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Job DescriptionP21169
Confidence99.32%DateThu Jan 5 11:37:54 GMT 2012
Rank222Aligned Residues330
% Identity15%Templatec3oksB_
PDB info PDB header:transferaseChain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   156...160.........170........ .180.........190.........200.. .......210.........220.........230.
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Query Sequence  VKLGDLLIHEGSAKDAQKFAAKV. . FHADKTYFVLNGTSAANKVVTNAL. . LTRGDLVLFDRNNHKSNHHGALIQAGATP
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Template Sequence  HTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTN. LTMALTAKVM
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TTTTS

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   91........100.........110.........120.........130.........140.........150......... 160.........
 
   232.......240.........250.........260.........270.........280..... ....290. ..
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Query Sequence  . . . . . . . . . . . . VYLEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPYRLAIIQLGTY. . DGTVYN. . . . AR
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Template Sequence  PYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLA. . AVVIEPIQGEGGFIVPADGFLP
Template Known Secondary structure  TTTTT

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GGG
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GGG..
SSBTTTT
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   170.........180.........190.........200.........210.........220..... ....230.........240.......
 
   294.....300.........310.........320.........330.........340.........350.........360.........370...
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Query Sequence  QVIDTVGHLCDYILFDSAWVGYEQFIPMMADSSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIRGQARFCP
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Template Sequence  TLLDWCRKNDVVFIADEVQTGFARTG. . . AMFACEHEGIDPD. . . . LIVTA. . GIAGGLPLSAVTGR. . . . . . . . . . . . .
Template Known Secondary structure  TT

TTTTTTTTS...SSSGGGTTT


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   248.250.........260.........270... ......280...... ...290. ........300.....
 
   374.....380.........390.........400.........410.........420.........430.........440.........450...
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Query Sequence  HKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVEIGIEARKAILARCKLFRPFIPPVVDGKLWQDYPTS
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Template Sequence  . AEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRG. . . . . . . . .
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   307..310.........320.........330.........340.........350.........360.........370......
 
   454.....460.........470.........480.........490.........500.........510.........520...... ...530.
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Query Sequence  VLASDRRFFSFEPGAKWHGFEGYAADQYFVDPCKLLLTTPGIDAETGEYSDFGVPATILAHYLRENGIVPEKC. . DLNSI
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AMIAMELVKAGTTEPDADLTK. . . . . . ALCAGAHAAGVIVLSCGTYGNVV
Template Known Secondary structure  ..............................TBSTTS

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   377..380.........390....... ..400.........410.........420
 
   532.......540.........550......
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Query Sequence  LFLLTPAESHEKLAQLVAMLAQFEQ
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Template Sequence  RFLPPLSIGDDLLNEGLDVLEEVLR
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   421........430.........440.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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