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Job DescriptionP21169
Confidence100.00%DateThu Jan 5 11:37:54 GMT 2012
Rank3Aligned Residues641
% Identity34%Templatec3n75E_
PDB info PDB header:lyaseChain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60........ .70.........80....... ..90........
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Query Sequence  DFTDVAAVVITAADSRSGILALLKRTGFHLPVFLYSEHAV. . ELPAGVTAVINGNEQQWLE. . . . . . . . LESAACQYEEN
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Template Sequence  NNARLCGVIFDWDKYNLELCEEISKMNENLPLYAFANTYSTLDVSLNDLRLQISFFEYALGAAEDIANKIKQTTDEYINT
Template Known Secondary structure 
TT
TT


TT



GGGTTS




TT
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   48.50.........60.........70.........80.........90.........100.........110.........120.......
 
   99100.........110.........120.........130.........140.........150.........160.........170........
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Query Sequence  LLPPFYDTLTQYVEMGNSTFACPGHQHGAFFKKHPAGRHFYDFFGENVFRADMCNADVKLGDLLIHEGSAKDAQKFAAKV
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Template Sequence  ILPPLTKALFKYVREGKYTFCTPGHMGGTAFQKSPVGSLFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEQYIARV
Template Known Secondary structure  S




S
SSTTTTTTS
T


TTSGGG
BTTTTBT
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   128.130.........140.........150.........160.........170.........180.........190.........200.......
 
   179180.........190.........200.........210.........220.........230.........240.........250........
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Query Sequence  FHADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKSNHHGALIQAGATPVYLEASRNPFGFIGGIDAHCFNEEYLR
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Template Sequence  FNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHL. MMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIA
Template Known Secondary structure  T
SSS

TT
SS

.S




TT




GGGGS
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   208.210.........220.........230.........240.........250. ........260.........270.........280......
 
   259260.........270.........280.........290.........300.........310.........320.... .....330.....
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Query Sequence  QQIRDVAPEKADLPRPYRLAIIQLGTYDGTVYNARQVIDTVGHLCDYILFDSAWVGYEQFIPMMAD. . . SSPLLLELNEN
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Template Sequence  KRVKETPNATW. . . . . PVHAVITNSTYDGLLYNTDFIKKTLDVKS. . IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVI
Template Known Secondary structure  STT

S.....
SSS
TT




S..
TT
TTGGGSGGGTTSSTTSS


TT
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   287..290....... ..300.........310.........320...... ...330.........340.........350.........
 
   336...340.........350.........360.........370.........380.........390.........400.........410.....
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Query Sequence  DPGIFVTQSVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAE
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Template Sequence  . . . . YETQSTHL. LAAFSQASMIHVKGD. . . . . . . . VNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLING
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S

TT
S
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   360....... ..370.........380.. .......390.........400.........410.........420......
 
   416...420.........430 .........440.........450.........460.........470.........480.........490
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Query Sequence  CVEIGIEARKAILAR. . . . . CKLFRPFIPPVVDGKLWQDYPTSVLASDRRFFSFEPGAKWHGFEGYAADQYFVDPCKLLL
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Template Sequence  SIERAIKFRKEIKRLRTESDGWFFDVWQPDHID. . . . . . . . . . . . . . TTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTL
Template Known Secondary structure  SSS


SS
S


..............S
S


TT

TT

TT

SSS
TT
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   428.430.........440.........450.........460 .........470.........480.........490...
 
   491........500.........510.........520.........530.........540.........550.........560.........570
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Query Sequence  TTPGIDAETGEYSDFGVPATILAHYLRENGIVPEKCDLNSILFLLTPAESHEKLAQLVAMLAQFEQHIEDDSPLVEVLPS
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Template Sequence  LTPGMEKDG. TMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDLNLRVKNMLPS
Template Known Secondary structure 
SSB
SSS.
B
SS


TT


S
SS

TT

TT
B
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   494.....500.. .......510.........520.........530.........540.........550.........560.........570..
 
   571........580.........590.........600.........610.........620.........630.........640.........650
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Query Sequence  VYNKYPVRYRDYTLRQLCQEMHDLYVSFDVKDLQKAMFRQQSFPSVVMNPQDAHSAYIRGDVELVRIRDAEGRIAAEGAL
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Template Sequence  LYREDPEFYENMRIQELAQNIHKLIVHHNLPDLMYRAF. . EVLPTMVMTPYAAFQKELHGMTEEVYLDEMVGRINANMIL
Template Known Secondary structure 
SS
BTT..S

SS
TT
GGG
TT
BB
S
B
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   573......580.........590.........600.........610 .........620.........630.........640.........650
 
   651........660........ .670.........680.........690.........700.........710.
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Query Sequence  PYPPGVLCVVPGEVWGGA. . . VQRYFLALEEGVNLLPGFSPELQGVYSETDADGVKRLYGYVLK
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Template Sequence  PYPPGVPLVMPGEMITEESRPVLEFLQMLCEIGAHYPGFETDIHGAYRQADGR. . . . YTVKVLK
Template Known Secondary structure  TT
S

B
TT

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   651........660.........670.........680.........690.........700... ......710
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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