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Job DescriptionP21169
Confidence99.84%DateThu Jan 5 11:37:54 GMT 2012
Rank64Aligned Residues338
% Identity13%Templatec3l8aB_
PDB info PDB header:lyaseChain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase; PDBTitle: crystal structure of metc from streptococcus mutans
Resolution1.54 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   126...130.........140.........150.........160.........170.........180.. .......190.........200..
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Query Sequence  GAFFKKHPAGRHFYDFFGENVFRADMCNADVKLGDLLIHEGSAKDAQKFAAKVFHAD. . . KTYFVLNGTSAANKVVTNAL
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Template Sequence  WVADMDFLPVPEIKEAIINYGREHIFG. YNYFNDDL. . . . . . YQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF
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   33......40.........50......... 60....... ..70.........80.........90.........100.....
 
   203......210.........220.........230.........240.........250.........260.........270.........280..
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Query Sequence  LTRGDLVLFDRNNHKSNHHGALIQAGATPVYLEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPYRLAIIQL
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Template Sequence  SEKGDAVLINSPVYYPFAR. TIRLNDHRLVENSLQIINGRF. . . . . . . EIDFEQLEKDIID. . . . . . . . . NNVKIYLLCS
Template Known Secondary structure  S
TS

.TT
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   106...110.........120.... .....130.........140..... ....150........ .160........
 
   283.. ....290. ........300.........310.........320.........330.........340.........350........
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Query Sequence  GTY. DGTVYN. . . ARQVIDTVGHLCDYILFDSAWVGYEQFIPMMADSSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQI
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Template Sequence  PHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFG. . . NTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSF
Template Known Secondary structure  SBTTTTB


T

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TTGGGT
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   169170.........180.........190.........200......... 210.........220.........230.........240.....
 
   359360.........370.........380.........390.........400.........410.........420.........430........
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Query Sequence  HKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVEIGIEARKAILARCKLFRPFI
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Template Sequence  AIIQNE. . . . . . . SLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPW. LEELKTVIEGNIKLVIKELEAKTK. IKVME
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   246...250. ........260.........270.........280....... ..290.........300.........310. .....
 
   439440.........450.........460.........470.........480.........490.........500.........510...... .
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Query Sequence  PPVVDGKLWQDYPTSVLASDRRFFSFEPGAKWHGFEGYAADQYFVDPCKLLLTTPGIDAETGEYSDFGVPATILAHYL. R
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Template Sequence  PE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GTYLVWLDF. . . . . . . . . . SAYAIAQPQLSEKLQN
Template Known Secondary structure 
S...........................................BSS
..........GGGT

TT
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   317. .320....... ..330.........340...
 
   518.520.... .....530.........540.........550....
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Query Sequence  ENGIVPE. . . . . . KCDLNSILFLLTPAESHEKLAQLVAMLAQF
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Template Sequence  EAKVVLNDGAHFGKEGKYFARL. . NVATPKNTVQEALSRIISV
Template Known Secondary structure  TS

GGGG
GGGTT..

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   344.....350.........360..... ....370.........380....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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