Job Description P21169 Confidence 99.63% Date Thu Jan 5 11:37:54 GMT 2012 Rank 171 Aligned Residues 300 % Identity 17% Template c3i4jC_ PDB info PDB header:transferase Chain: C: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans Resolution 1.70 Å

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		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																								.																	.	.	.	.	.	.	.
Query SS confidence																								.																	.	.	.	.	.	.	.
Query Sequence		H	E	G	S	A	K	D	A	Q	K	F	A	A	K	V	F	H	A	D	K	T	Y	.	F	V	L	N	G	T	S	A	A	N	K	V	V	T	N	A	.	.	.	.	.	.	.	L	L	T	R	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	I	Q	A	G	A	T	P	V	Y	L	E
Query Conservation																								.																	.	.	.	.	.	.	.
Alig confidence																								.																	.	.	.	.	.	.	.																						.
Template Conservation																																																																					.
Template Sequence		S	S	D	V	L	E	E	Y	A	G	R	L	A	R	F	V	G	L	P	T	F	R	F	W	A	V	S	G	G	S	E	A	T	E	S	A	V	K	L	A	R	Q	Y	H	V	E	R	G	E	P	G	R	F	K	V	I	T	R	V	P	S	R	E	L	Y	T	P	.	L	M	R	P	E	A	W	P	K	L	P	K
Template Known Secondary structure																	T	T		T	T							S	S																			T	T		T	T								T	T			T	T	T	G	G	.	G	G	S	G	G	G
Template Predicted Secondary structure																																																																					.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.				.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																															.																				.	.	.	.									.	.	.
Query SS confidence																															.																				.	.	.	.									.	.	.
Query Sequence		A	S	R	N	P	F	G	F	I	G	G	I	D	A	H	C	F	N	E	E	Y	L	R	Q	Q	I	R	D	V	.	A	P	E	K	A	D	L	P	R	P	Y	R	L	A	I	I	Q	L	G	.	.	.	.	T	Y	D	G	T	V	Y	N	.	.	.	A	R	Q	V	I	D	T	V	G	H	L	C	D	Y	I	L
Query Conservation																															.																				.	.	.	.									.	.	.
Alig confidence											.	.	.	.	.	.	.	.													.						.	.	.	.	.	.	.	.							.	.	.	.									.	.	.
Template Conservation											.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Sequence		P	D	P	A	R	N	G	A	E	.	.	.	.	.	.	.	.	D	A	E	G	L	R	A	L	L	E	R	E	G	P	E	T	V	A	.	.	.	.	.	.	.	.	A	F	M	A	E	P	V	V	G	A	S	D	A	A	L	A	P	A	P	G	Y	Y	E	R	V	R	D	I	C	D	E	A	G	I	I	F	I
Template Known Secondary structure				T	T	S					.	.	.	.	.	.	.	.			T											G	G	G			.	.	.	.	.	.	.	.						S	S			G	G	G	T	T					T	T													T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.									.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.									.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	A	D	S	S	P	L	L	L	E	L	N	E	N	D	P	G	I	F	V	T	Q	S	V	H	K	Q	Q	A	.	G	F	S	Q	T	S	Q	I	H	K	K	D	N	H	I	R	G	Q	A	R	F	C	P	H	K	R	L	N	N	A	F	M	L	H	A	S
Query Conservation																																													.
Alig confidence							.							.	.	.														.	.	.	.												.															.	.	.	.	.	.	.	.	.
Template Conservation							.							.	.	.														.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Sequence		A	D	E	V	M	.	S	G	M	G	R	C	.	.	.	G	S	P	L	A	L	S	R	W	S	G	V	T	.	.	.	.	P	D	I	A	V	L	G	K	G	L	A	A	G	Y	A	P	L	A	G	L	L	A	A	P	Q	V	.	.	.	.	.	.	.	.	.	Y	E	T	V	M	G	G	F	M	H	G	F	T
Template Known Secondary structure					T	T	.	T	T	T	T	T	T	.	.	.	S	S	S	S	G	G	G	G	T	T	T			.	.	.	.		S						G	G	G	T	T	T	S	S												.	.	.	.	.	.	.	.	.													T
Template Predicted Secondary structure							.							.	.	.														.	.	.	.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.		.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.					.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.										280	.	.	.	.	.	.	.	.	.	290	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	P	F	Y	P	L	F	A	A	L	D	V	N	A	K	I	H	E	G	E	S	G	R	R	L	W	A	E	C	V	E	I	G	I	E	A	R	K	A	I	L	A	R	C	K	L	F	R	P	F	I	P	P	V	V	D	G	K	L	W	Q	D	Y	P	T	S	V	L	A	S	D	R	R	F	F	S	F	E	P
Query Conservation
Alig confidence																					.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	A	G	H	P	V	S	V	A	A	G	L	S	V	L	D	I	V	E	.	.	.	R	E	D	L	T	G	A	A	K	E	R	G	A	Q	L	L	A	G	L	Q	A	L	Q	A	R	F	P	Q	M	M	Q	V	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T																	.	.	.		T	T																								T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	K	W	H	G	F	E	G	Y	A	A	D	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	E	T	G	E	Y	S	D	F	G	V	P	A	T	I	L	A	H	Y	L	R	E	N	G	I	V	P	E	K	C	D	L	N	S	I	L	F	L	L	T	P	A	E	S	H	E	K	L	A	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	L	L	L	G	V	V	L	G	.	.	.	.	.	.	.	.	.	.	.	.	D	L	I	A	S	R	I	G	A	A	A	L	K	R	G	L	I	T	.	.	.	.	Y	D	H	L	L	L	G	P	P	L	S	I	T	A	A	E	V	D	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T								.	.	.	.	.	.	.	.	.	.	.	.															T	B			.	.	.	.										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template SS confidence
																			349	350	.	.	.	.	.	.	.	.													.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.					.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		547	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	M	L	A	Q	F	E	Q	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	A	L	L	A	G	A	L	E	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions