Job Description P21169 Confidence 99.89% Date Thu Jan 5 11:37:54 GMT 2012 Rank 36 Aligned Residues 314 % Identity 15% Template c2z9wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		S	A	K	D	A	Q	K	F	A	A	K	V	F	H	A	D	K	T	.	Y	F	V	L	N	G	T	S	A	A	N	K	V	V	T	N	A	L	L	T	R	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	I	Q	A	G	A	T	P	V	Y	L	E	A	S	R	N	P	F	G	F	I	G
Query Conservation																				.
Alig confidence																				.																																						.																							.
Template Conservation																																																										.																							.
Template Sequence		L	Y	E	K	V	V	D	K	A	Q	K	A	M	R	L	S	N	K	P	V	I	L	H	G	E	P	V	L	G	L	E	A	A	A	A	S	L	I	S	P	D	D	V	V	L	N	L	A	S	G	V	Y	G	K	G	F	.	G	Y	W	A	K	R	Y	S	P	H	L	L	E	I	E	V	P	Y	N	E	A	I	.
Template Known Secondary structure														T	T		S	S						S	S		T														T	T								S	S							.									S									T	T	S			.
Template Predicted Secondary structure																																																										.																							.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		G	I	D	A	H	C	F	N	E	E	Y	L	R	Q	Q	I	R	D	V	A	P	E	K	A	D	L	P	R	P	Y	R	L	A	I	I	Q	L	G	T	Y	.	D	G	T	V	Y	N	A	R	Q	V	I	D	T	V	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E	Q	F	I	P	M	M	A	D
Query Conservation																																										.
Alig confidence		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.									.																															.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	D	P	Q	A	V	A	D	M	L	K	A	H	P	E	I	T	V	.	.	.	.	.	.	.	.	V	S	V	C	H	H	D	T	P	S	G	T	I	N	P	I	D	A	I	G	A	L	V	S	A	H	G	A	Y	L	I	V	D	A	V	S	S	F	G	.	.	.	.	.	.	.	.	G
Template Known Secondary structure		.	.	.	.	.	.	.													T	T				.	.	.	.	.	.	.	.					S			G	G	G	T															T	T								T	T	T	B	T	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template SS confidence
									122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.									.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.									.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	P	L	L	L	E	L	N	E	N	D	P	G	I	F	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	N	H	I	R	G	Q	A	R	F	C	P	H	K	R	L	N	N	A	F	M	L	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	T	H	P	E	D	C	K	A	D	.	.	.	.	I	Y	V	T	G	P	N	K	C	L	G	A	P	P	G	L	T	M	M	G	V	.	.	.	.	.	.	.	.	.	.	.	.	S	E	R	A	W	A	K	M	K	A	N	P	L	A	P	R	A	S	M	L	S	I	V	D	W	E	N	A	W	S	R	D
Template Known Secondary structure		B	S			G	G	G	T	T		S	.	.	.	.						S	S	S	T	T				S								.	.	.	.	.	.	.	.	.	.	.	.										T		T	T	S			S	S	T	T		S	G	G	G	T	T	T	T	S	T	T
Template Predicted Secondary structure													.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.					190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210													.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
					386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	S	T	S	P	F	Y	P	L	F	A	A	L	D	V	N	A	K	I	H	E	G	E	S	G	R	R	L	W	A	E	C	V	E	I	G	I	E	A	R	K	A	I	L	A	R	C	K	L	F	R	P	F	I	P	P	V	V	D	G	K	L	W	Q	D	Y	P	T	S	V	L	A	S	D	R	R	F	F
Query Conservation		.	.	.
Alig confidence		.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	P	F	P	F	T	P	S	V	S	E	I	N	G	L	D	V	A	L	D	L	Y	L	N	E	G	P	E	A	V	W	A	R	H	A	L	T	A	K	A	M	R	A	G	V	T	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S			S	S																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.		.	.	.	520	.	.	.						.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure																																																								.								.	.	.	.	.
Query SS confidence																																																								.								.	.	.	.	.
Query Sequence		S	F	E	P	G	A	K	W	H	G	F	E	G	Y	A	A	D	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	E	T	G	E	Y	S	D	F	G	V	P	A	T	I	L	A	H	Y	L	.	R	E	N	G	I	V	P	.	.	.	.	.	E	K	C	D	L	N	S	I	L	F	L	L	T
Query Conservation																																																								.								.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.												.								.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	G	L	S	V	W	A	A	S	D	S	I	A	S	P	T	T	T	A	V	R	T	P	D	.	.	.	.	.	.	.	.	.	.	.	G	V	D	E	K	A	L	R	Q	A	A	R	A	R	Y	G	V	V	F	S	S	G	R	G	E	T	L	G	K	L	T	R	I	G	H	M	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T			B	S	S	S	S	G	G	G	B		S	S								T	.	.	.	.	.	.	.	.	.	.	.	T																			B				G	G	G	T	T	T								G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.												.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	E	S	H	E	K	L	A	Q	L	V	A	M	L	A	Q	F	E	Q	H	I	E	D	D	S	P	L	V	E	V	L	P	S	V	Y	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	T	A	Q	P	I	Y	A	I	A	A	L	T	A	L	G	G	A	M	N	A	A	G	R	K	L	A	I	G	K	G	I	E	A	A	L	A
Template Known Secondary structure		G	G		S																		T	T
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions