Job Description P21169 Confidence 99.56% Date Thu Jan 5 11:37:54 GMT 2012 Rank 190 Aligned Residues 301 % Identity 12% Template c2x5dD_ PDB info PDB header:transferase Chain: D: PDB Molecule:probable aminotransferase; PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa Resolution 2.25 Å

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		169	170	.	.	.	.	.	.	.	.	.	180									.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure														.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.
Query Sequence		K	D	A	Q	K	F	A	A	K	V	F	H	.	.	.	.	.	.	.	.	A	D	K	T	Y	F	V	L	N	G	T	S	A	A	N	K	V	V	T	N	A	L	L	T	R	G	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	I	Q	A	G	A	T	P	V	Y	L	E	A	S	R	N	P
Query Conservation														.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.																																										.
Template Conservation																																																															.
Template Sequence		P	R	L	R	R	A	I	S	H	W	Y	R	D	R	Y	D	V	Q	I	D	P	E	S	E	A	I	V	T	I	G	S	K	E	G	L	A	H	L	M	L	A	T	L	D	H	G	D	T	I	L	V	P	N	P	S	Y	P	I	H	I	Y	.	G	A	V	I	A	G	A	Q	V	R	S	V	P	L	V	P	G	I
Template Known Secondary structure																						T	T	T	S					S	S															T	T								S			T					.					T	T									S	T	T	S
Template Predicted Secondary structure																																																															.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.					290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.
Query SS confidence																																																			.	.	.	.
Query Sequence		F	G	F	I	G	G	I	D	A	H	C	F	N	E	E	Y	L	R	Q	Q	I	R	D	V	A	P	E	K	A	D	L	P	R	P	Y	R	L	A	I	I	Q	L	G	T	Y	D	G	T	V	.	.	.	.	Y	N	A	R	Q	V	I	D	T	V	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E
Query Conservation																																																			.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.													.	.	.	.																									.
Template Conservation						.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																																									.
Template Sequence		D	F	F	N	.	.	.	.	.	.	.	.	E	L	E	R	A	I	R	E	S	I	P	K	P	R	M	.	.	.	.	.	.	.	.	.	.	M	I	L	G	F	P	S	N	P	T	A	Q	C	V	E	L	D	F	F	E	R	V	V	A	L	A	K	Q	Y	D	V	M	V	V	H	D	L	A	Y	A	.	D	I
Template Known Secondary structure						.	.	.	.	.	.	.	.								T	S	S	S			S		.	.	.	.	.	.	.	.	.	.					S	S		T	T	T																				T								T	T	T	.	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.																																									.
Template SS confidence
		156	.	.	.									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.											.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		Q	F	I	P	M	M	A	D	S	S	P	L	L	L	E	L	N	E	N	D	P	G	I	F	V	T	Q	S	V	H	K	Q	Q	A	.	G	F	S	Q	T	S	Q	I	H	K	K	D	N	H	I	R	G	Q	A	R	F	C	P	H	K	R	L	N	N	A	F	M	L	H	A	S	T	S	P	F	Y	P	L	F	A
Query Conservation																																				.
Alig confidence					.	.	.																													.															.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.																																												.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	D	.	.	.	G	W	K	A	P	S	I	M	Q	V	P	G	A	K	D	I	A	V	E	F	F	T	L	S	K	S	Y	N	M	A	G	W	R	I	G	F	M	V	G	N	P	E	L	.	.	.	.	.	.	.	.	.	V	S	A	L	A	R	I	K	S	Y	H	D	Y	G	T	F	T	P	L	Q	V	A
Template Known Secondary structure		B		T	.	.	.	T						G	G	G	S	T	T	G	G	G	T							S	T	T	T	T	T			S													.	.	.	.	.	.	.	.	.										T	T		S	S	S
Template Predicted Secondary structure					.	.	.																																												.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.										.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	D	V	N	A	K	I	H	E	G	E	S	G	R	R	L	W	A	E	C	V	E	I	G	I	E	A	R	K	A	I	L	A	R	C	K	L	F	R	P	F	I	P	P	V	V	D	G	K	L	W	Q	D	Y	P	T	S	V	L	A	S	D	R	R	F	F	S	F	E	P	G	A	K	W	H	G	F	E	G
Query Conservation
Alig confidence														.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	A	A	L	E	G	D	Q	Q	C	V	.	.	R	D	I	A	R	Q	Y	Q	Q	R	R	D	V	L	V	K	G	L	R	E	A	G	W	M	V	E	N	P	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S						.	.																					T	T							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.					.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure																																											.																.	.	.	.
Query SS confidence																																											.																.	.	.	.
Query Sequence		Y	A	A	D	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	E	T	G	E	Y	S	D	F	G	V	P	A	T	I	L	A	H	Y	L	.	R	E	N	G	I	V	P	E	K	C	D	L	N	S	I	.	.	.	.	L	F	L	L	T	P	A	E	S	H	E	K	L	A	Q	L	V	A	M
Query Conservation																																											.																.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.															.																.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	S	M	Y	V	W	A	K	I	P	E	.	.	.	.	.	.	.	.	P	Y	A	H	L	G	S	L	E	F	A	K	K	L	L	Q	D	A	K	V	S	V	S	P	G	I	G	F	G	D	Y	G	D	D	H	V	R	F	A	L	I	E	N	R	D	R	L	R	Q	A	V	R	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	B	S	S									.	.	.	.	.	.	.	.				T	T																				G	G	G	G		G	G	G	T	T								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template SS confidence
										326	.	.	.	330	.	.	.	.	.	.									.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		551	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	Q	F	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	A	M	F	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions