Job Description P21169 Confidence 99.40% Date Thu Jan 5 11:37:54 GMT 2012 Rank 214 Aligned Residues 299 % Identity 15% Template c2cy8A_ PDB info PDB header:transferase Chain: A: PDB Molecule:d-phenylglycine aminotransferase; PDBTitle: crystal structure of d-phenylglycine aminotransferase (d-phgat) from2 pseudomonas strutzeri st-201 Resolution 2.30 Å

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		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		H	E	G	S	A	K	D	A	Q	K	F	A	A	K	V	F	H	A	D	K	T	Y	F	V	L	N	G	T	S	A	A	N	K	V	V	T	N	A	L	L	T	R	G	.	D	L	V	L	F	D	R	N	N	H	K	S	N	H	H	G	A	L	I	Q	A	G	A	T	P	V	Y	L	E	A	S	R	N	P	F	G
Query Conservation																																													.
Alig confidence																																													.												.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template Sequence		H	P	L	E	V	R	W	A	E	R	I	V	A	A	F	P	S	I	R	K	L	R	F	T	G	S	G	T	E	T	T	L	L	A	L	R	V	A	R	A	F	T	G	R	R	M	I	L	R	F	E	G	T	T	A	.	.	.	.	.	.	.	.	.	.	.	.	N	T	L	L	I	R	P	D	.	.	.	.	.
Template Known Secondary structure																	T	T		S						S																													G	G	.	.	.	.	.	.	.	.	.	.	.	.	G						T	T	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150													.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.					.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																													.	.							.	.	.	.
Query SS confidence																																													.	.							.	.	.	.
Query Sequence		F	I	G	G	I	D	A	H	C	F	N	E	E	Y	L	R	Q	Q	I	R	D	V	A	P	E	K	A	D	L	P	R	P	Y	R	L	A	I	I	Q	L	G	T	Y	.	.	D	G	T	V	Y	N	.	.	.	.	A	R	Q	V	I	D	T	V	G	H	L	C	D	Y	I	L	F	D	S	A	W	V	G	Y	E
Query Conservation																																													.	.							.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.									.	.							.	.	.	.																								.
Template Conservation		.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																																												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	D	I	E	G	M	R	E	V	F	A	N	H	G	S	D	I	A	.	.	.	.	.	.	.	.	A	F	I	A	E	P	V	G	S	H	F	G	V	T	P	V	S	D	S	F	L	R	E	G	A	E	L	A	R	Q	Y	G	A	L	F	I	L	D	E	V	I	S	G	.	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.													G	G	G			.	.	.	.	.	.	.	.						S	S						T																		T	T								T	T	T	T	.	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																																												.
Template SS confidence
												187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.									.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	I	P	M	M	A	D	S	S	P	L	L	L	E	L	N	E	N	D	P	G	I	F	V	T	Q	S	V	H	K	Q	Q	A	G	F	S	Q	T	S	Q	I	H	K	K	D	N	H	I	R	G	Q	A	R	F	C	P	H	K	R	L	N	N	A	F	M	L	H	A	S	T	S	P	F	Y	P	L	F	A	A
Query Conservation
Alig confidence					.	.	.														.	.	.	.						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.														.	.	.	.						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	G	.	.	.	N	H	G	M	Q	A	L	L	D	V	Q	P	D	.	.	.	.	L	T	C	L	A	.	.	K	A	S	A	G	G	L	P	G	G	I	L	G	G	R	E	D	V	M	G	V	L	S	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	T	G	N	P	I	T	A	A	A
Template Known Secondary structure		T	T		.	.	.	T	T							T				S	.	.	.	.						.	.	G	G	G	G	T	T	S	S												T	T	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.														.	.	.	.						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.															.	.	.	.	.	.	300	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	V	N	A	K	I	H	E	G	E	S	G	R	R	L	W	A	E	C	V	E	I	G	I	E	A	R	K	A	I	L	A	R	C	K	L	F	R	P	F	I	P	P	V	V	D	G	K	L	W	Q	D	Y	P	T	S	V	L	A	S	D	R	R	F	F	S	F	E	P	G	A	K	W	H	G	F	E	G	Y
Query Conservation
Alig confidence											.	.	.																																																															.	.	.	.	.	.
Template Conservation											.	.	.																																																															.	.	.	.	.	.
Template Sequence		A	I	A	A	I	D	T	I	L	.	.	.	E	D	D	V	C	A	K	I	N	D	L	G	Q	F	A	R	E	A	M	N	H	L	F	A	R	K	G	L	N	W	L	A	Y	G	R	F	S	G	F	H	L	M	P	G	L	P	P	N	T	T	D	T	G	S	I	T	R	A	E	V	A	R	.	.	.	.	.	.
Template Known Secondary structure											.	.	.		T	T																							T	T									T	T							T	S		T	T									T	T		S			.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.																																																															.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.				.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	D	Q	Y	F	V	D	P	C	K	L	L	L	T	T	P	G	I	D	A	E	T	G	E	Y	S	D	F	G	V	P	A	T	I	L	A	H	Y	L	R	E	N	G	I	V	P	E	K	C	D	L	N	S	I	L	F	L	L	T	P	A	E	S	H	E	K	L	A	Q	L	V	A	M	L	A	Q	F	E	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	V	K	M	I	A	A	M	R	M	A	L	I	L	E	G	V	D	I	G	.	.	.	.	G	R	G	S	V	F	L	S	A	Q	H	E	R	E	H	V	E	H	L	V	T	T	F	D	R	V	L	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T				B	.	.	.	.	T	T	T						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
																													385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.					.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
		557	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	E	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	A	D	E
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions