Job Description P08997 Confidence 100.00% Date Thu Jan 5 11:01:45 GMT 2012 Rank 4 Aligned Residues 400 % Identity 19% Template d1d8ca_ SCOP info TIM beta/alpha-barrel Malate synthase G Malate synthase G Resolution 2.00

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		113	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.
Predicted Secondary structure														.																						.	.	.	.	.	.	.	.																																				.	.
Query SS confidence														.																						.	.	.	.	.	.	.	.																																				.	.
Query Sequence		V	F	M	A	D	F	E	D	S	L	A	P	.	D	W	N	K	V	I	D	G	Q	I	N	L	R	D	A	V	N	G	T	I	S	.	.	.	.	.	.	.	.	Y	T	N	E	A	G	K	I	Y	Q	L	K	P	N	P	A	V	L	I	C	R	V	R	G	L	H	L	P	E	K	H	V	T	W	R	.	.	G
Query Conservation														.																						.	.	.	.	.	.	.	.																																				.	.
Alig confidence														.																						.	.	.	.	.	.	.	.												.													.											.	.
Template Conservation																																																							.													.
Template Sequence		S	T	I	L	D	C	E	D	S	V	A	A	V	D	A	E	D	K	I	L	L	Y	R	N	L	L	G	L	X	Q	G	T	L	Q	R	K	L	N	D	D	R	H	Y	T	A	A	D	G	S	E	I	S	L	.	H	G	R	S	L	L	F	I	R	N	V	G	.	H	L	X	T	I	P	V	I	W	D	S	E	G
Template Known Secondary structure							S	S	T	T					S																	T															T	T	S						.			S										.	S	S									T	T	S
Template Predicted Secondary structure																																																							.													.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.
		182	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.																	.
Query SS confidence											.	.	.																	.
Query Sequence		E	A	I	P	G	S	L	F	D	.	.	.	F	A	L	Y	F	F	H	N	Y	Q	A	L	L	A	K	G	.	S	G	P	Y	F	Y	L	P	K	T	Q	S	W	Q	E	A	A	W	W	S	E	V	F	S	Y	A	E	D	R	F	N	L	P	R	G	T	I	K	A	T	L	L	I	E	T	L	P	A	V	F	Q
Query Conservation											.	.	.																	.
Alig confidence											.	.	.																	.
Template Conservation
Template Sequence		N	E	I	P	E	G	I	L	D	G	V	X	T	G	A	I	A	L	Y	D	L	K	V	Q	K	N	S	R	T	G	S	V	Y	I	V	K	P	K	X	H	G	P	Q	E	V	A	F	A	N	K	L	F	T	R	I	E	T	X	L	G	X	A	P	N	T	L	K	X	G	I	X	D	E	E	R	R	T	S	L	N
Template Known Secondary structure																										S	S		S	S	S								S			S																			T			T	T										S						T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	E	I	L	H	A	L	R	D	H	I	V	G	L	N	C	G	R	W	D	Y	I	F	S	Y	I	K	T	L	K	N	Y	P	D	R	V	L	P	D	R	Q	A	V	T	M	D	K	P	F	L	N	A	Y	S	R	L	L	I	K	T	C	H	K	R	G	A	F	A	M	G	G	M	A	A	F	I	P	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	S	C	I	A	Q	A	R	N	R	V	A	F	I	N	T	G	F	L	D	R	T	G	D	E	X	H	S	V	X	E	A	G	P	X	L	R	K	N	Q	X	K	S	T	P	W	I	K	A	Y	E	R	N	N	V	L	S	G	L	F	C	G	L	R	G	K	A	Q	I	G	K	G	X	W	A	X	P	D	L
Template Known Secondary structure								T	T	T	T	T																			T	G	G	G	S		B			G	G	G	G	G	G																		T	T		T	T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.				.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.							.	.	.	.	.
Query SS confidence																																																																				.	.	.							.	.	.	.	.
Query Sequence		D	E	E	H	N	N	Q	V	L	N	K	V	K	A	D	K	S	L	E	A	N	N	G	H	D	G	T	W	I	A	H	P	G	L	A	D	T	A	M	A	V	F	N	D	I	L	G	S	R	K	N	Q	L	E	V	M	R	E	Q	D	A	P	I	T	A	D	.	.	.	Q	L	L	A	P	C	.	.	.	.	.
Query Conservation																																																																				.	.	.							.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																								.																			.	.	.							.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																								.
Template Sequence		.	.	.	.	.	.	.	.	X	A	D	X	Y	S	Q	K	G	D	Q	L	R	A	G	A	N	T	A	W	V	P	S	P	T	A	A	T	L	H	A	L	H	Y	H	Q	T	N	V	.	Q	S	V	Q	A	N	I	A	Q	T	E	F	N	A	E	F	E	P	L	L	D	D	L	L	T	I	P	V	A	E	N	A
Template Known Secondary structure		.	.	.	.	.	.	.	.								T						T	T		S					S	S														S			.										S		G	G	G	G									T	S			B		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																								.
Template SS confidence
										515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.		.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
				410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.		.	.	.	.	.	.	440	.	.	.	.						.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure		.	.																									.												.	.	.	.	.
Query SS confidence		.	.																									.												.	.	.	.	.
Query Sequence		.	.	D	G	E	R	T	E	E	G	M	R	A	N	I	R	V	A	V	Q	Y	I	E	A	W	I	.	S	G	N	G	C	V	P	I	Y	G	L	.	.	.	.	.	M	E	D	A	A	T	A	E	I	S	R	T	S	I	W	Q	W	I	H	H	Q	K	T	L	S	N	G	K	P	V	T	K	A	L	F	R	Q
Query Conservation		.	.																									.												.	.	.	.	.
Alig confidence		.	.																									.												.	.	.	.	.
Template Conservation
Template Sequence		N	W	S	A	Q	E	I	Q	Q	E	L	D	N	N	V	Q	G	I	L	G	Y	V	V	R	W	V	E	Q	G	I	G	C	S	K	V	P	D	I	H	N	V	A	L	X	E	D	R	A	T	L	R	I	S	S	Q	H	I	A	N	W	L	R	H	G	I	L	T	K	E	Q	V	Q	A	S	L	E	N	X	A	K
Template Known Secondary structure																																S							T	T	S																							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	G	E	E	M	K	V	I	A	S	E	L	G	E	E	R	F	S	Q	G	R	F	D	D	A	A	R	L	M	E	Q	I	T	T	S	D	E	L	I	D	F	L	T	L	P	G	Y
Query Conservation
Alig confidence						.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		V	V	D	Q	.	.	.	.	.	.	Q	N	A	G	D	P	A	Y	R	P	X	A	G	N	F	A	N	S	C	A	F	K	A	A	S	D	L	I	F	L	G	V	K	Q	P	N	G	Y
Template Known Secondary structure						.	.	.	.	.	.		T	T	T		T	T					T	T		T	T	T													T	G	G	G	S	G	G	G
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		666	.	.	.							670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.