Job Description P08997 Confidence 100.00% Date Thu Jan 5 11:01:45 GMT 2012 Rank 5 Aligned Residues 318 % Identity 17% Template c3pugA_ PDB info PDB header:transferase Chain: A: PDB Molecule:malate synthase; PDBTitle: haloferax volcanii malate synthase native at 3mm glyoxylate Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure											.	.	.	.	.												.	.	.	.
Query SS confidence											.	.	.	.	.												.	.	.	.
Query Sequence		R	R	V	E	I	T	G	P	V	.	.	.	.	.	E	R	K	M	V	I	N	A	L	N	A	.	.	.	.	N	V	K	V	F	M	A	D	F	E	D	S	L	A	P	D	W	N	K	V	I	D	G	Q	I	N	L	R	D	A	V	N	G	T	I	S	Y	T	N	E	A	G	K	I	Y	Q	L	K	P	N	P
Query Conservation											.	.	.	.	.												.	.	.	.
Alig confidence											.	.	.	.	.												.	.	.	.																				.	.																			.
Template Conservation																																																		.	.																			.
Template Sequence		V	R	T	F	F	T	S	P	T	A	V	E	D	D	S	A	K	M	L	R	R	A	A	G	L	R	G	M	Q	A	P	D	V	W	V	P	D	N	E	D	A	T	A	P	S	M	R	D	.	.	E	G	A	E	N	I	V	E	V	I	S	E	Q	G	A	E	F	P	.	G	E	I	H	P	R	M	V	W	H	R
Template Known Secondary structure										S						T	T							T	T			G	G	G	S		S						S	S	T	T	S		G	G	G			.	.														G	G	G			.	S					B					T
Template Predicted Secondary structure																																																		.	.																			.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	L	I	C	R	V	R	G	L	H	L	P	E	K	H	V	T	W	R	G	E	A	I	P	G	S	L	F	D	F	A	L	Y	F	F	H	N	Y	Q	A	L	L	A	K	G	S	G	P	Y	F	Y	L	P	K	T	Q	S	W	Q	E	A	A	W	W	S	E	V	F	S	Y	A	E	D	R	F	N	L	P	R
Query Conservation
Alig confidence												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	S	P	E	T	R	Y	Q	G	F	.	.	Q	H	M	L	D	I	T	D	P	E	R	G	A	V	E	H	I	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	I	P	E	V	G	G	I	D	D	W	K	K	A	D	E	F	F	T	I	V	E	H	E	H	G	L	D	E
Template Known Secondary structure		T										.	.							T		G	G	G	S		G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S			S																		T	T			T
Template Predicted Secondary structure												.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.																				.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.
Query Sequence		G	T	I	K	A	T	L	L	I	E	T	L	P	A	V	F	Q	M	D	E	I	L	.	.	.	.	.	.	H	A	L	R	D	H	I	V	G	L	N	C	G	R	W	D	Y	I	F	S	Y	I	K	T	L	K	N	Y	P	D	R	V	L	P	D	R	Q	A	V	T	M	D	K	P	F	L	N	A	Y	S	R	L
Query Conservation																								.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	L	A	M	S	V	I	I	E	S	G	E	A	E	L	A	M	G	D	L	R	D	E	M	G	K	P	T	N	N	L	E	R	L	F	L	L	V	D	G	E	V	D	Y	T	K	D	M	R	A	M	T	P	T	G	E	L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	W	P	E	L	R	H	N
Template Known Secondary structure		T		S								S							G	G	G					T	T	S	T	T			G	G	G															T	T				S	S						.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.														.	210	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	K	T	C	H	K	R	G	A	F	A	M	G	G	M	A	A	F	I	P	S	K	D	E	E	H	N	N	Q	V	L	N	K	V	K	A	D	K	S	L	E	A	N	N	G	H	D	G	T	W	I	A	H	P	G	L	A	D	T	A	M	A	V	F	N	D	I	L	G	S	R	K	N	Q	L	E	V	M	R
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	S	R	G	A	S	A	A	G	C	V	A	V	D	G	.	.	.	.	.	.	.	.	.	P	Y	D	D	I	R	D	V	E	G	Y	R	E	R	M	T	D	N	Q	A	K	G	M	L	G	I	W	S	L	T	P	G	Q	V	V	E	A	N	T	S	P	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T							.	.	.	.	.	.	.	.	.					T	T														T	T	T							S	S										T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230										.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		E	Q	D	A	P	I	T	A	D	Q	L	L	A	P	C	D	G	E	R	T	E	E	G	M	R	A	N	I	R	V	A	V	Q	Y	I	.	E	A	W	I	S	G	N	G	C	V	P	I	Y	G	L	M	E	D	A	A	T	A	E	I	S	R	T	S	I	W	Q	W	I	H	H	Q	K	T	L	S	N	G	K	P
Query Conservation																																					.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	T	G	S	W	L	L	D	E	E	L	L	G	L	T	S	Y	V	P	S	M	D	D	I	V	D	S	M	E	E	F	E	W	D	E	A	T	Y	Q	A	A	M	T	P	I	S	L	F	Q	D	V	Y	E	N	R	P	D	Q	H	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S									S	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	K	A	L	F	R	Q	M	L	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	E	E	R	Y	G	A	G	V	V	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions