Phyre 2 alignment of P08997 with c2vgbB

Job Description P08997
Confidence 98.29% Date Thu Jan 5 11:01:45 GMT 2012

Rank 30 Aligned Residues 254

% Identity 14% Template c2vgbB_

PDB info PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase isozymes r/l; PDBTitle: human erythrocyte pyruvate kinase

Resolution 2.73 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																	.	.	.					.	.
Query SS confidence																	.	.	.					.	.
Query Sequence	K	I	R	G	I	P	A	D	L	E	D	R	R	V	E	I	.	.	.	T	G	P	V	.	.	E	R	K	M	V	I	N	A	L	N	A	N	V	K	V	F	M	A	D	F	E	D	S	L	A	P	D	W	N	K	V	I	D	G	Q	I	N	L	R	D	A	V	N	G	T	I	S	Y	T	N	E	A	G	K	I
Query Conservation																	.	.	.					.	.
Alig confidence																	.	.	.					.	.
Template Conservation
Template Sequence	L	L	D	I	D	S	E	P	V	A	A	R	S	T	S	I	I	A	T	I	G	P	A	S	R	S	V	E	R	L	K	E	M	I	K	A	G	M	N	I	A	R	L	N	F	S	H	G	S	H	E	Y	H	A	E	S	I	A	N	V	R	E	A	V	E	S	F	A	G	S	P	L	S	Y	R	P	V	A	I	A
Template Known Secondary structure	T			T	T	S				S				S							S	G	G	G		S											T								T	T	S	S																		T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
	75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.

	154	.	.	.	.	.	160												.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																																	.	.	.	.	.	.	190
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Y	Q	L	K	P	N	P	.	.	.	.	.	.	.	.	.	.	.	A	V	L	I	C	R	V	R	G	L	H	L	P	E	K	H	V	T	W	R	G	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	G	S	L	F	D
Query Conservation								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	D	T	K	G	P	E	I	R	T	G	I	V	E	L	V	K	G	S	Q	V	L	V	T	A	N	T	V	W	V	D	Y	P	N	I	V	R	V	V	P	V	G	G	R	I	Y	I	D	D	G	L	I	S	L	V	V	V	T	Q	V	E	N	G	G	V	L	G	S	R	K	G	V	N	L	P	G	A	Q	V	D
Template Known Secondary structure						S			B	B							T	T												B	S		T	T							T	T						T	T	T	T																	S	S		B				S	S	S
Template Predicted Secondary structure
Template SS confidence
	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

	191	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence	F	A	L	Y	F	F	H	N	Y	Q	.	.	A	L	L	A	K	G	S	G	P	Y	F	Y	L	P	K	T	Q	S	W	Q	E	A	A	W	W	S	E	V	F	S	Y	A	E	D	R	F	N	L	P	R	G	T	I	K	A	T	L	L	I	E	T	L	P	A	V	F	Q	M	D	E	I	L	H	A	L	R	D	H
Query Conservation											.	.
Alig confidence											.	.																																		.	.	.	.	.	.	.																									.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.																									.	.	.	.
Template Sequence	L	P	G	L	S	E	Q	D	V	R	D	L	R	F	G	V	E	H	G	V	D	I	V	F	A	S	F	V	R	K	A	S	D	V	A	A	V	R	A	A	L	G	P	E	G	.	.	.	.	.	.	.	H	G	I	K	I	I	S	K	I	E	N	H	E	G	V	K	R	F	D	E	I	L	E	V	.	.	.	.
Template Known Secondary structure	S		S	S														T	T							T	T			S													G	G	G	.	.	.	.	.	.	.	S	S	S								S						T								.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.																									.	.	.	.
Template SS confidence
	261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.								.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

	269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	V	G	L	N	C	G	R	W	D	Y	I	F	S	Y	I	K	T	L	K	N	Y	P	D	R	V	L	P	D	R	Q	A	V	T	M	D	K	P	F	L	N	A	Y	S	R	L	L	I	K	T	C	H	K	R	G	A	F	A	M	G	G	M	A	A	F	I	P	S	K	D	E	E	H	N	N	Q	V	L	N	K
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template Sequence	S	D	G	I	M	V	A	R	G	D	L	G	I	E	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	K	V	F	L	A	Q	K	M	M	I	G	R	C	N	L	A	G	K	P	V	V	C	.	.	.	A	T	Q	M	L	E	S	M	I	T	K	P	R	P	T	R	A
Template Known Secondary structure	S	S													S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G																T						.	.	.		S		T	T	G	G	G	G	T		S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.
Template SS confidence
	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.																					.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.				370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

	349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	K	A	D	K	S	L	E	A	N	N	G	H	D	G	T	W	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	T	S	D	V	A	N	A	V	L	D	G	A	D	C	I	M	L
Template Known Secondary structure												T		S
Template Predicted Secondary structure
Template SS confidence
	387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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