Job Description P08997 Confidence 98.56% Date Thu Jan 5 11:01:45 GMT 2012 Rank 28 Aligned Residues 259 % Identity 17% Template c1vbhA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate,orthophosphate dikinase; PDBTitle: pyruvate phosphate dikinase with bound mg-pep from maize Resolution 2.30 Å

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		90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.											.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure										.																		.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query SS confidence										.																		.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.														.	.	.	.
Query Sequence		R	R	V	E	I	T	G	P	.	V	E	R	K	M	V	I	N	A	L	N	A	N	V	K	V	F	.	.	.	.	.	.	M	A	D	F	E	D	S	L	.	.	.	.	.	.	.	.	.	.	A	P	D	W	N	K	V	I	D	G	Q	I	N	.	.	.	.	L	R	D	A	V	N	G	T	I	S	Y	T	N
Query Conservation										.																		.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.														.	.	.	.
Alig confidence										.																		.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.														.	.	.	.
Template Conservation
Template Sequence		R	K	L	K	V	L	A	N	A	D	T	P	D	D	A	L	T	A	R	N	N	G	A	Q	G	I	G	L	C	R	T	E	H	M	F	F	A	S	D	E	R	I	K	A	V	R	Q	M	I	M	A	P	T	L	E	L	R	Q	Q	A	L	D	R	L	L	P	Y	Q	R	S	D	F	E	G	I	F	R	A	M	D
Template Known Secondary structure				S								S										T	T			S						G	G	G	G	T	T	T															S	S																										T	T
Template Predicted Secondary structure
Template SS confidence
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
		149	150	.	.	.	.	.	.																																								.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	G	K	I	Y	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	N	P	A	V	L	I	C	R	V	R	G	L	H	L	P	E	K	H	V	T	W	R	G	E	A	I	P	G	S	L	F
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	P	V	T	I	R	L	L	D	P	P	L	H	E	F	L	P	E	G	N	I	E	D	I	V	S	E	L	C	A	E	T	G	A	N	Q	E	D	A	L	A	R	I	E	K	L	S	E	V	N	P	M	L	G	F	R	G	C	R	L	G	I	S	Y	P	E	.	.	.	.	.	.	.	.	.	.	.	L	T
Template Known Secondary structure		T	S									S		G	G	G	G	S			S																														S		G	G	G	S	S		T										.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.												.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.				.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																							.	.	.																											.	.	.
Query SS confidence																							.	.	.																											.	.	.
Query Sequence		D	F	A	L	Y	F	F	H	N	Y	Q	A	L	L	A	K	G	S	G	P	Y	.	.	.	F	Y	L	P	K	T	Q	S	W	Q	E	A	A	W	W	S	E	V	F	S	Y	A	E	D	R	F	.	.	.	N	L	P	R	G	T	I	K	A	T	L	L	I	E	T	L	P	A	V	F	Q	M	D	E	I	L	H
Query Conservation																							.	.	.																											.	.	.
Alig confidence																							.	.	.																											.	.	.
Template Conservation
Template Sequence		E	M	Q	A	R	A	I	F	E	A	A	I	A	M	T	N	Q	G	V	Q	V	F	P	E	I	M	V	P	L	V	G	T	P	Q	E	L	G	H	Q	V	T	L	I	R	Q	V	A	E	K	V	F	A	N	V	G	K	T	I	G	Y	K	V	G	T	M	I	E	I	P	R	A	A	L	V	A	D	E	I	A	E
Template Known Secondary structure																	T	T	T											S			S																						T	T													S						T					T	T
Template Predicted Secondary structure
Template SS confidence
		684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.								.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																					.	.									.	.	.	.	.	.	.																	.	.
Query SS confidence																																					.	.									.	.	.	.	.	.	.																	.	.
Query Sequence		A	L	R	D	H	I	V	G	L	N	C	G	R	W	D	Y	I	F	S	Y	I	K	T	L	K	N	Y	P	D	R	V	L	P	D	R	.	.	Q	A	V	T	M	D	K	P	.	.	.	.	.	.	.	F	L	N	A	Y	S	R	L	L	I	K	T	C	H	K	R	.	.	G	A	F	A	M	G	G	M	A	A
Query Conservation																																					.	.									.	.	.	.	.	.	.																	.	.
Alig confidence			.	.	.	.																															.	.									.	.	.	.	.	.	.																	.	.					.	.	.	.	.	.
Template Conservation			.	.	.	.																																																																						.	.	.	.	.	.
Template Sequence		Q	.	.	.	.	A	E	F	F	S	F	G	T	N	D	L	T	Q	M	T	F	G	Y	S	R	D	D	V	G	K	F	I	P	V	Y	L	A	Q	G	I	L	Q	H	D	P	F	E	V	L	D	Q	R	G	V	G	E	L	V	K	F	A	T	E	R	G	R	K	A	R	P	N	L	K	V	.	.	.	.	.	.
Template Known Secondary structure		T	.	.	.	.		S															T							T	T	T							T	T	S		S	S		T	T	T	S			T	T	T																S	T	T				.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.																																																																						.	.	.	.	.	.
Template SS confidence
		764					.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	P	S	K	D	E	E	H	N	N	Q	V	L	N	K	V	K	A	D	K	S	L	E	A	N	N	G	H	D	G	T	W	I	A	H	P	G	L	A	D	T	A	M	A	V
Query Conservation
Alig confidence		.																			.	.	.	.	.	.	.										.
Template Conservation		.																			.	.	.	.	.	.	.										.
Template Sequence		.	G	I	C	G	E	H	G	G	E	P	S	S	V	A	F	F	A	K	.	.	.	.	.	.	.	A	G	L	D	Y	V	S	C	S	.	P	F	R	V	P	I	A	R	L	A
Template Known Secondary structure		.				S	G	G	G	G											.	.	.	.	.	.	.		T		S						.	G	G	G
Template Predicted Secondary structure		.																			.	.	.	.	.	.	.										.
Template SS confidence
			834	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.								.	.	.	.	.	.	.	.	860		.	.	.	.	.	.	.	.	.	870

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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