Job Description P08997 Confidence 98.44% Date Thu Jan 5 11:01:45 GMT 2012 Rank 29 Aligned Residues 254 % Identity 18% Template c1t5aB_ PDB info PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase, m2 isozyme; PDBTitle: human pyruvate kinase m2 Resolution 2.80 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.											140	.	.	.
Predicted Secondary structure																		.	.	.					.	.																																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.					.	.																																										.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	R	G	I	P	A	D	L	E	D	R	R	V	E	I	.	.	.	T	G	P	V	.	.	E	R	K	M	V	I	N	A	L	N	A	N	V	K	V	F	M	A	D	F	E	D	S	L	A	P	D	W	N	K	V	I	D	G	Q	I	N	L	R	D	A	.	.	.	.	.	.	.	.	.	.	V	N	G	T
Query Conservation																		.	.	.					.	.																																										.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.					.	.																																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	D	I	D	S	P	P	I	T	A	R	N	T	G	I	I	C	T	I	G	P	A	S	R	S	V	E	T	L	K	E	M	I	K	S	G	M	N	V	A	R	L	N	F	S	H	G	T	H	E	Y	H	A	E	T	I	K	N	V	R	T	A	T	E	S	F	A	S	D	P	I	L	Y	R	P	V	A	V	A
Template Known Secondary structure		T			T	T	S				S				S								T	T	T													T								T	T	S	S																		T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		144	.	.	.	.	.	150	.	.	.											.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.										170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																																.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																																.	.	.	.
Query Sequence		I	S	Y	T	N	E	A	G	K	I	.	.	.	.	.	.	.	.	.	.	Y	Q	L	K	P	N	P	A	V	L	I	C	R	V	R	G	.	.	.	.	.	.	.	.	.	L	H	L	P	E	K	H	V	T	W	R	G	E	A	I	P	G	S	L	F	D	F	A	L	Y	F	F	H	N	Y	Q	.	.	.	.
Query Conservation												.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																																.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation
Template Sequence		L	D	T	K	G	P	E	I	R	T	G	L	I	K	G	S	G	T	A	E	V	E	L	K	K	G	A	T	L	K	I	T	L	D	N	A	Y	M	E	K	C	D	E	N	I	L	W	L	D	Y	K	N	I	C	K	V	V	E	V	G	S	K	I	Y	V	D	D	G	L	I	S	L	Q	V	K	Q	K	G	A	D
Template Known Secondary structure							S				B			B	S	S	S	S	S							T	T									G	G	G	T	T		B	B	T	T				B	S		S	G	G	G	G	T			T	T						T	T	T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
																																								201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	A	K	G	S	G	P	Y	F	Y	L	P	K	T	Q	S	W	Q	E	A	A	W	W	S	E	V	F	S	Y	A	E	D	R	F	N	L	P	R	G	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.
Template Sequence		F	L	V	T	E	V	E	N	G	G	S	L	G	S	K	K	G	V	N	L	P	G	A	A	V	D	L	P	A	V	S	E	K	D	I	Q	D	L	K	F	G	V	E	Q	D	V	D	M	V	F	A	S	F	I	R	K	A	S	D	V	H	E	V	R	K	V	L	G	E	K	.	.	.	.	.	.	.	G	K	N
Template Known Secondary structure															S	S						S	S							S	S														T	T		S					T	T			S												T	G	G	.	.	.	.	.	.	.	G	T	T
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.								.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	A	T	L	L	I	E	T	L	P	A	V	F	Q	M	D	E	I	L	H	A	L	R	D	H	I	V	G	L	N	C	G	R	W	D	Y	I	F	S	Y	I	K	T	L	K	N	Y	P	D	R	V	L	P	D	R	Q	A	V	T	M	D	K	P	F	L	N	A	Y	S	R	L	L	I	K	T	C	H	K	R
Query Conservation
Alig confidence																								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	I	I	S	K	I	E	N	H	E	G	V	R	R	F	D	E	I	L	E	A	.	.	.	.	S	D	G	I	M	V	A	R	G	D	L	G	I	E	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	K	V	F	L	A	Q	K	M	M	I	G	R	C	N	R	A
Template Known Secondary structure		S								S						T								.	.	.	.	S	S													S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G
Template Predicted Secondary structure																								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.					.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.																					.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	F	A	M	G	G	M	A	A	F	I	P	S	K	D	E	E	H	N	N	Q	V	L	N	K	V	K	A	D	K	S	L	E	A	N	N	G	H	D	G	T	W	I
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		G	K	P	V	I	C	.	.	.	A	T	Q	M	L	E	S	M	I	K	K	P	R	P	T	R	A	E	G	S	D	V	A	N	A	V	L	D	G	A	D	C	I	M	L
Template Known Secondary structure		T						.	.	.		S	S	T	T	G	G	G	G	T		S	S																T		S
Template Predicted Secondary structure								.	.	.
Template SS confidence
		321	.	.	.	.	.				.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions