Phyre 2 alignment of P0AB77 with d1x0ma1

Job Description P0AB77
Confidence 100.00% Date Thu Jan 5 11:14:48 GMT 2012

Rank 45 Aligned Residues 354

% Identity 15% Template d1x0ma1

SCOP info PLP-dependent transferase-like PLP-dependent transferases AAT-like

Resolution 2.20

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure													.																																																				.	.	.
Query SS confidence													.																																																				.	.	.
Query Sequence	D	G	S	H	V	I	N	F	C	A	N	N	.	Y	L	G	L	A	N	H	P	D	L	I	A	A	A	K	A	G	M	D	S	H	G	F	G	M	A	S	V	R	F	I	C	G	T	Q	D	S	H	K	E	L	E	Q	K	L	A	A	F	L	G	M	.	.	.	E	D	A	I	L	Y	S	S	C	F	D	A	N
Query Conservation													.																																																				.	.	.
Alig confidence													.																																																				.	.	.
Template Conservation
Template Sequence	E	T	S	D	I	I	S	L	A	G	G	L	P	N	P	K	T	F	P	K	E	I	I	R	D	I	L	V	E	I	M	E	K	Y	A	D	K	A	L	Q	Y	G	T	T	K	G	F	T	P	L	R	E	T	L	M	K	W	L	G	K	R	Y	G	I	S	Q	D	N	D	I	M	I	T	S	G	S	Q	Q	A	L
Template Known Secondary structure	T	T		S	S										G	G	G	S																S						S				T	T																					T	T	S						S
Template Predicted Secondary structure
Template SS confidence
	54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

	116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.						170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence	G	G	L	F	E	T	L	L	G	A	E	D	A	I	I	S	D	A	L	N	H	A	S	I	I	D	G	V	R	L	C	K	A	K	R	Y	R	Y	A	N	N	D	M	Q	E	L	E	A	R	L	K	E	A	R	.	.	.	.	.	E	A	G	A	R	H	V	L	I	A	T	D	G	V	F	S	M	D	G	V	I
Query Conservation																																																							.	.	.	.	.
Alig confidence																																																							.	.	.	.	.
Template Conservation
Template Sequence	D	L	I	G	R	V	F	L	N	P	G	D	I	V	V	V	E	A	P	T	Y	L	A	A	L	Q	A	F	N	F	Y	E	P	Q	Y	I	Q	I	P	L	D	D	E	G	M	K	V	E	I	L	E	E	K	L	K	E	L	K	S	Q	G	K	K	V	K	V	V	Y	T	V	P	T	F	Q	N	P	A	G	V	T
Template Known Secondary structure										T	T								S											T	T											T	T																T	T	T											S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
	134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

	191	.				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure			.	.	.																																															.
Query SS confidence			.	.	.																																															.
Query Sequence	A	N	.	.	.	L	K	G	V	C	D	L	A	D	K	Y	D	A	L	V	M	V	D	D	S	H	A	V	G	F	V	G	E	N	G	R	G	S	H	E	Y	C	D	V	M	G	R	V	D	I	I	.	T	G	T	L	G	K	A	L	G	G	A	S	G	G	Y	T	A	A	R	K	E	V	V	E	W	L	R	Q
Query Conservation			.	.	.																																															.
Alig confidence			.	.	.																																															.
Template Conservation
Template Sequence	M	N	E	D	R	R	K	Y	L	L	E	L	A	S	E	Y	D	F	I	V	V	E	D	D	P	Y	G	E	L	R	Y	S	G	N	P	E	K	K	I	K	A	L	D	N	E	G	R	V	I	Y	L	G	T	F	S	K	I	L	A	P	G	F	R	I	G	W	M	V	G	D	P	G	I	I	R	K	M	E	I	A
Template Known Secondary structure																T	T								S	S	T	T		B		S	S						T	G	G	G		S	S	S								S	T	T	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
	214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

	267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.				.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																																			.	.	.									.
Query SS confidence																																																			.	.	.									.
Query Sequence	R	S	R	P	Y	L	F	S	N	S	L	A	P	A	I	V	A	A	S	I	K	V	L	E	M	V	E	A	G	S	E	L	R	D	R	L	W	A	N	A	R	Q	F	R	E	Q	M	S	A	A	.	.	.	G	F	T	L	A	G	A	D	.	H	A	I	I	P	V	M	L	G	D	A	V	V	A	Q	K	F	A
Query Conservation																																																			.	.	.									.
Alig confidence																																																			.	.	.									.
Template Conservation
Template Sequence	K	Q	S	T	D	L	C	T	N	V	F	G	Q	V	V	A	W	R	Y	V	D	G	G	Y	L	E	K	H	I	P	E	I	R	K	F	Y	K	P	R	R	D	A	M	L	E	A	L	E	E	F	M	P	E	G	V	K	W	T	K	P	E	G	G	M	F	I	W	V	T	L	P	D	G	I	D	S	K	K	M	L
Template Known Secondary structure						S		S														T	T																														T	T							S	B	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
	294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

	343	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence	R	E	L	Q	K	E	G	I	Y	V	T	G	F	.	F	Y	P	V	V	P	K	G	Q	A	R	I	R	T	Q	M	S	A	A	H	T	P	E	Q	I	T	R	A	V	E	A	F	T	R	I	G	K	Q	L
Query Conservation														.
Alig confidence														.																		.
Template Conservation																																.
Template Sequence	E	R	A	I	K	K	G	V	A	Y	V	P	G	E	A	F	Y	A	H	R	D	V	K	N	T	M	R	L	N	F	T	.	Y	V	D	E	D	K	I	M	E	G	I	K	R	L	A	E	T	I	K	E	E
Template Known Secondary structure						T	T						G	G	G	G		S	S					S							S	.	S	S
Template Predicted Secondary structure																																.
Template SS confidence
	374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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