Job Description P0AB77 Confidence 100.00% Date Thu Jan 5 11:14:48 GMT 2012 Rank 32 Aligned Residues 354 % Identity 16% Template c3nuiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate transaminase; PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17 Resolution 2.00 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																										.	.	.																																																					.
Query SS confidence																										.	.	.																																																					.
Query Sequence		R	I	I	T	S	A	Q	Q	A	D	I	T	V	A	D	G	S	H	V	I	N	F	C	A	.	.	.	N	N	Y	L	G	L	A	N	H	P	D	L	I	A	A	A	K	A	G	M	D	S	H	G	F	G	M	A	S	V	R	F	I	C	G	T	Q	D	S	H	K	E	L	E	Q	K	L	A	A	F	L	G	.
Query Conservation																										.	.	.																																																					.
Alig confidence																										.	.	.						.																				.	.	.																									.
Template Conservation																																		.																				.	.	.
Template Sequence		V	V	V	T	H	G	E	G	P	Y	I	V	D	V	N	G	R	R	Y	L	D	A	N	S	G	L	W	N	M	V	A	G	.	F	D	H	K	G	L	I	D	A	A	K	A	Q	Y	E	R	F	P	G	.	.	.	Y	H	A	F	F	G	R	M	S	D	Q	T	V	M	L	S	E	K	L	V	E	V	S	P	F
Template Known Secondary structure									T	T					T	T							T	T					T		T	T		.	S																			.	.	.				B	T	T	B																S	S
Template Predicted Secondary structure																																		.																				.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
			102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.										.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.																						.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																						.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	M	E	D	A	I	L	Y	S	S	C	F	D	A	N	G	G	L	F	E	T	L	.	.	.	.	.	.	.	.	.	L	G	A	E	D	A	I	I	S	D	A	L	N	H	A	S	I	I	D	G	V	R	L	C	K	A	K	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.																						.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																						.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	G	R	V	F	Y	T	N	S	G	S	E	A	N	D	T	M	V	K	M	L	W	F	L	H	A	A	E	G	K	P	Q	K	R	K	I	L	T	R	W	N	A	Y	H	G	V	T	A	V	S	A	S	M	T	G	K	P	Y	N	S	V	F	G	L	P	L	P	G	F	V	H	L	T	C	P	H	Y	W	R
Template Known Secondary structure		S	S							S	S																			T	T		T	T								T	T					S	S							S			G	G	G	G	G	G	T		S		T	T
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
											152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																										.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																																										.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	R	Y	A	N	N	D	M	Q	E	L	E	A	R	L	K	E	A	R	E	A	G	A	R	H	V	L	I	A	T	D	G	V	F	S	M	D	G	V	I	A	N	.	.	.	.	L	K	G	V	C	D	L	A	D	K	Y	D	A	L	V	M	V	D	D	S	H	A	V	G	F	V
Query Conservation		.	.	.	.	.	.	.	.	.																																										.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																					.	.																				.	.	.	.																							.
Template Conservation																															.	.																																														.
Template Sequence		Y	G	E	E	G	E	T	E	E	Q	F	V	A	R	L	A	R	E	L	E	E	T	I	Q	R	E	G	A	D	.	.	T	I	A	G	F	F	A	E	P	V	M	G	A	G	G	V	I	P	P	A	K	G	Y	F	Q	A	I	L	P	I	L	R	K	Y	D	I	P	V	I	S	D	E	V	I	C	.	G	F	G
Template Known Secondary structure					T	T																							G	G	.	.	G								S	S	B	S	T	T	T	S	B				T	T												T	T								T	T	T	.	T	T	T
Template Predicted Secondary structure																															.	.																																														.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		G	E	N	G	R	G	S	H	E	Y	C	D	V	M	G	R	V	D	I	I	T	G	T	L	G	K	A	L	G	G	A	S	G	G	Y	T	A	A	R	.	.	K	E	V	V	E	W	L	R	Q	R	S	R	P	Y	L	F	S	N	S	L	A	P	A	I	V	A	A	S	I	K	V	L	E	M	V	E	A	G	S
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		R	T	G	N	T	W	G	C	V	T	Y	D	F	T	P	D	A	I	I	S	S	K	N	L	T	A	G	F	F	P	M	G	A	V	I	L	G	P	E	L	S	K	R	L	E	T	A	I	E	A	I	E	E	F	P	H	G	F	T	A	S	G	H	P	V	G	C	A	I	A	L	K	A	I	D	V	V	M	N	E
Template Known Secondary structure		T	T	S	S	S	S					T	T				S						G	G	G	G	T	T	S	S																							T	S			T	T																							S
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.												.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																						.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	R	D	R	L	W	A	N	A	R	Q	F	R	E	Q	M	S	A	A	.	.	.	.	G	F	T	L	A	G	A	D	H	A	I	I	P	V	M	L	G	.	.	.	.	.	.	.	.	.	.	.	D	A	V	V	A	Q	K	F	A	R	E	L	Q	K	E	G	I	Y	V	T	G	F	F	Y	P	V	V	P
Query Conservation																						.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		G	L	A	E	N	V	R	R	L	A	P	R	F	E	E	R	L	K	H	I	A	E	R	P	N	I	G	E	Y	R	G	I	G	F	M	W	A	L	E	A	V	K	D	K	A	S	K	T	P	F	D	G	N	L	S	V	S	E	R	I	A	N	T	C	T	D	L	G	L	I	C	R	P	L	G	.	.	.	.	.
Template Known Secondary structure		S																				T	T	S	T	T								T	T								S	B	T	T	T	T	B				G	G	G													T	T							T	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	Q	A	R	I	R	T	Q	M	S	A	A	H	T	P	E	Q	I	T	R	A	V	E	A	F	T	R	I	G	K	Q	L
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	Q	S	V	V	L	C	P	P	F	I	L	T	E	A	Q	M	D	E	M	F	D	K	L	E	K	A	L	D	K	V
Template Known Secondary structure		.	.	.	T								T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions