Job Description P0AB77 Confidence 99.97% Date Thu Jan 5 11:14:48 GMT 2012 Rank 111 Aligned Residues 329 % Identity 15% Template c3mafB_ PDB info PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form) Resolution 2.97 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																			.																					.	.	.	.	.	.																			.	.
Query SS confidence																																			.																					.	.	.	.	.	.																			.	.
Query Sequence		L	G	L	A	N	H	P	D	L	I	A	A	A	K	A	G	M	D	S	H	G	F	G	M	A	S	V	R	F	I	C	G	T	.	Q	D	S	H	K	E	L	E	Q	K	L	A	A	F	L	G	M	E	D	A	.	.	.	.	.	.	I	L	Y	S	S	C	F	D	A	N	G	G	L	F	E	T	L	L	.	.
Query Conservation																																			.																					.	.	.	.	.	.																			.	.
Alig confidence																																			.																					.	.	.	.	.	.																			.	.
Template Conservation
Template Sequence		A	G	A	V	Y	D	E	H	H	I	A	F	L	N	E	V	Y	A	L	Q	S	Q	S	N	P	L	H	P	D	L	W	P	S	T	A	K	F	E	A	E	V	V	A	M	T	A	H	M	L	G	G	D	A	A	G	G	T	V	C	G	T	V	T	S	G	G	T	E	S	L	L	L	A	M	K	T	Y	R	D	W
Template Known Secondary structure																						T	T			T	T		T	T	T																			T	T	T	T	T	T	T	S								S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
								124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.						.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure		.	.	.	.	.	.																																		.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																		.	.	.	.	.
Query Sequence		.	.	.	.	.	.	G	A	E	D	A	I	I	S	D	A	L	N	H	A	S	I	I	D	G	V	R	L	C	K	A	K	R	Y	R	Y	A	N	N	.	.	.	.	.	D	M	Q	E	L	E	A	R	L	K	E	A	R	E	A	G	A	R	H	V	L	I	A	T	D	G	V	F	S	M	D	G	V	I	A	N
Query Conservation		.	.	.	.	.	.																																		.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																		.	.	.	.	.												.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.
Template Sequence		A	R	A	T	K	G	I	T	A	P	E	A	V	V	P	V	S	A	H	A	A	F	D	K	A	A	Q	Y	F	G	I	K	L	V	R	T	P	L	D	A	D	Y	R	A	D	V	A	A	M	R	E	A	I	T	P	.	.	.	.	.	.	N	T	V	V	V	A	G	S	A	P	G	Y	P	H	G	V	V	D	P
Template Known Secondary structure									S	S							T	T	S		T										T								B		T	T	S	S	B											T	.	.	.	.	.	.	T								T	T		T	T	T
Template Predicted Secondary structure																																																									.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.																																.	.
Query SS confidence																													.	.	.																																.	.
Query Sequence		L	K	G	V	C	D	L	A	D	K	Y	D	A	L	V	M	V	D	D	S	H	A	V	G	F	V	G	.	.	.	E	N	G	R	G	S	H	E	Y	C	D	V	M	G	R	V	D	I	I	T	G	T	L	G	K	A	L	G	G	A	S	.	.	G	G	Y	T	A	A	R	K	E	V	V	E	W	L	R	Q	R
Query Conservation																													.	.	.																																.	.
Alig confidence																													.	.	.																																.	.
Template Conservation
Template Sequence		I	P	E	I	A	A	L	A	A	E	H	G	I	G	C	H	V	D	A	C	L	G	G	F	I	L	P	W	A	E	R	L	G	Y	P	V	P	P	F	D	F	R	L	E	G	V	T	S	V	S	A	D	T	H	K	Y	G	Y	G	A	K	G	T	S	V	I	L	Y	R	R	P	D	L	L	H	Y	Q	Y	F	I
Template Known Secondary structure													T								T	T	T	T	T	T						T	T	T							S	T	T	S	T	T								T	T	T	T	T				S	S							S	S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		268	.	270	.	.	.	.	.											.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.																																										.
Query SS confidence										.	.	.	.	.	.	.	.	.	.																																										.
Query Sequence		S	R	P	Y	L	F	S	N	.	.	.	.	.	.	.	.	.	.	S	L	A	P	A	I	V	A	A	S	I	K	V	L	E	M	V	E	A	G	S	E	L	R	D	R	L	W	A	N	A	R	Q	F	R	E	Q	M	S	A	A	.	G	F	T	L	A	G	A	D	H	A	I	I	P	V	M	L	G	D	A	V
Query Conservation										.	.	.	.	.	.	.	.	.	.																																										.
Alig confidence										.	.	.	.	.	.	.	.	.	.																																										.																		.
Template Conservation																																																																															.
Template Sequence		A	A	D	W	P	G	G	L	Y	F	S	P	T	F	A	G	S	R	P	G	A	L	S	A	T	A	W	A	A	M	L	S	L	G	E	E	G	Y	L	D	A	T	R	R	I	L	Q	A	A	D	R	L	K	A	G	V	R	A	I	P	S	L	K	I	L	G	D	P	L	W	V	I	A	V	A	S	D	.	E	L
Template Known Secondary structure			S	S		T	T						S	S	S		S	S																																									T	S	T	T				S	S			S	S							S	.	S	S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		V	A	Q	K	F	A	R	E	L	Q	K	E	G	I	Y	V	T	G	F	F	Y	P	V	V	P	K	G	Q	A	R	I	R	T	Q	M	S	A	A	H	.	T	P	E	Q	I	T	R	A	V	E	A	F	T	R	I	G	K	Q	L
Query Conservation																																									.
Alig confidence																								.	.	.	.	.	.												.
Template Conservation																								.	.	.	.	.	.
Template Sequence		N	I	Y	Q	V	M	E	E	M	A	G	R	G	W	R	L	N	G	L	H	R	P	.	.	.	.	.	.	P	A	F	H	V	A	L	T	L	R	H	T	E	P	G	V	V	D	R	F	L	A	D	L	Q	D	A	V	A	Q	V
Template Known Secondary structure													T	T							T	T	T	.	.	.	.	.	.	T								G	G	G	S	S	T	T
Template Predicted Secondary structure																								.	.	.	.	.	.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.							.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions