Phyre 2 alignment of P0AB77 with c3jtxB

Job Description P0AB77
Confidence 100.00% Date Thu Jan 5 11:14:48 GMT 2012

Rank 64 Aligned Residues 365

% Identity 13% Template c3jtxB_

PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution

Resolution 1.91 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	G	L	F	K	E	E	R	I	I	T	S	A	Q	Q	A	D	I	T	V	A	D	G	S	H	V	I	N	F	C	A	N	N	Y	L	G	L	A	N	H	P	D	L	I	A	A	A	K	A	G	M	D	S	H	G	F	G	M	A	S	V	R	F	I	C	G	T	Q	D	S	H	K	E	L	E	Q	K	L	A	A
Query Conservation
Alig confidence																																			.																			.	.	.	.
Template Conservation																																			.																			.	.	.	.
Template Sequence	K	Q	L	K	P	Y	P	F	A	R	L	H	E	A	X	Q	G	I	S	A	P	E	G	X	E	A	V	P	L	H	I	G	E	P	.	K	H	P	T	P	K	V	I	T	D	A	L	T	A	S	L	H	E	.	.	.	.	L	E	K	Y	P	L	T	A	G	L	P	E	L	R	Q	A	C	A	N	W	L	K	R
Template Known Secondary structure	T	T														T	T					T	T						T	T			S		.		S													T	G	G	G	.	.	.	.	G	G	S				T	T
Template Predicted Secondary structure																																			.																			.	.	.	.
Template SS confidence
	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	99	100	.							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.																								.	.	.
Query SS confidence				.	.	.	.	.	.																								.	.	.
Query Sequence	F	L	G	.	.	.	.	.	.	M	E	D	A	I	L	Y	S	S	C	F	D	A	N	G	G	L	F	E	T	L	L	G	.	.	.	A	E	D	A	I	I	S	D	A	L	N	H	A	S	I	I	D	G	V	R	L	C	K	A	K	R	Y	R	Y	A	N	N	D	M	Q	E	L	E	A	R	L	K	E	A	R
Query Conservation				.	.	.	.	.	.																								.	.	.
Alig confidence				.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence	R	Y	D	G	L	T	V	D	A	D	N	E	I	L	P	V	L	G	S	R	E	A	L	F	S	F	V	Q	T	V	L	N	P	V	G	I	K	P	A	I	V	S	P	N	P	F	Y	Q	I	Y	E	G	A	T	L	L	G	G	G	E	I	H	F	A	N	C	P	A	P	S	F	N	P	D	W	R	S	I	S	E
Template Known Secondary structure		T	T	T					T	T	T	S					S	S																											S												T	T										T	T	T					G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																				.	.	.																																										.	.	.	.	.
Query SS confidence																				.	.	.																																										.	.	.	.	.
Query Sequence	E	A	G	A	R	H	V	L	I	A	T	D	G	V	F	S	M	D	G	.	.	.	V	I	A	N	L	K	G	V	C	D	L	A	D	K	Y	D	A	L	V	M	V	D	D	S	H	A	V	G	F	V	G	E	N	G	R	G	S	H	E	Y	C	.	.	.	.	.	D	V	M	G	R	V	D	I	I	T	G	T
Query Conservation																				.	.	.																																										.	.	.	.	.
Alig confidence																				.	.	.																																										.	.	.	.	.
Template Conservation
Template Sequence	E	V	W	K	R	T	K	L	V	F	V	C	S	P	N	N	P	S	G	S	V	L	D	L	D	G	W	K	E	V	F	D	L	Q	D	K	Y	G	F	I	I	A	S	D	E	C	Y	S	E	I	Y	F	D	G	N	K	P	L	G	C	L	Q	A	A	A	Q	L	G	R	S	R	Q	K	L	L	X	F	T	S	L
Template Known Secondary structure				T	T								S	S		T	T	T																												T	T	T	T			S	T	T													T	T				T	T
Template Predicted Secondary structure
Template SS confidence
	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

	242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	G	K	A	L	G	G	A	S	G	G	Y	T	A	A	R	K	E	V	V	E	W	L	R	Q	R	S	R	P	Y	L	F	S	N	S	L	A	P	A	I	V	A	A	S	I	K	V	L	E	M	V	E	A	G	S	E	L	R	D	R	L	W	A	N	A	R	Q	F	R	E	Q	M	S	A	A	G	F	T	L	A
Query Conservation
Alig confidence																											.	.
Template Conservation																											.	.
Template Sequence	S	R	S	N	V	P	G	L	R	S	G	F	V	A	G	D	A	E	L	L	K	N	F	L	L	Y	.	.	R	T	Y	H	G	S	A	X	S	I	P	V	Q	R	A	S	I	A	A	W	D	D	E	Q	H	V	I	D	N	R	R	L	Y	Q	E	K	F	E	R	V	I	P	I	L	Q	Q	V	F	D	V	K	L
Template Known Secondary structure				S		G	G	G																			.	.					T																																								T	T	T	S
Template Predicted Secondary structure																											.	.
Template SS confidence
	243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.						.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence	G	A	D	H	A	I	I	P	V	M	L	G	D	A	V	V	A	Q	K	F	A	R	E	L	Q	K	E	G	I	Y	V	T	G	F	F	Y	P	V	V	P	K	G	Q	.	.	.	.	.	A	R	I	R	T	Q	M	S	A	A	H	T	P	E	Q	I	T	R	A	V	E	A	F	T	R	I	G	K
Query Conservation																																												.	.	.	.	.
Alig confidence																																												.	.	.	.	.									.	.
Template Conservation																																																									.	.
Template Sequence	P	D	A	S	F	Y	I	W	L	K	V	P	D	G	D	D	L	A	F	A	R	N	L	W	Q	K	A	A	I	Q	V	L	P	G	R	F	L	A	R	D	T	E	Q	G	N	P	G	E	G	Y	V	R	I	A	L	V	.	.	A	D	V	A	T	C	V	K	A	A	E	D	I	V	S	L	Y	R
Template Known Secondary structure		S	S	S	S							T	T	S																				G	G	G	G	S			B	T	T	B		T	T	T	T								.	.	S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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