Phyre 2 alignment of P0AB77 with c3hvyC

Job Description P0AB77
Confidence 99.92% Date Thu Jan 5 11:14:48 GMT 2012

Rank 217 Aligned Residues 279

% Identity 19% Template c3hvyC_

PDB info PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence	N	H	P	D	L	I	A	A	A	K	A	G	M	D	S	H	G	F	G	M	A	S	V	R	F	I	C	G	T	Q	D	S	H	K	E	L	E	Q	K	L	A	A	F	L	G	M	E	D	A	I	L	.	.	.	Y	S	S	C	F	D	A	N	G	G	L	F	E	T	L	L	G	A	E	D	A	I	I	S	D	A
Query Conservation																																																				.	.	.
Alig confidence																														.																						.	.	.
Template Conservation																														.
Template Sequence	N	Q	L	K	V	L	K	A	F	Q	E	E	R	I	S	E	S	H	F	T	N	S	S	G	Y	G	Y	N	D	.	I	G	R	D	S	L	D	R	V	Y	A	N	I	F	N	T	E	S	A	F	V	R	P	H	F	V	N	G	T	H	A	I	G	A	A	L	F	G	N	L	R	P	N	D	T	X	X	S	I	C
Template Known Secondary structure												T	T			G	G	G	S					T	T		T	T		.															T		S						T	T		S	S												T			T	T						S	S
Template Predicted Secondary structure																														.
Template SS confidence
	44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.

	134	.	.	.	.	.	140	.	.	.													.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query Sequence	L	N	H	A	S	I	I	D	G	V	.	.	.	.	.	.	.	.	.	.	.	.	R	L	C	K	A	K	R	Y	R	Y	A	N	N	D	M	Q	E	L	E	A	R	L	K	E	A	R	E	A	G	A	R	H	V	L	I	A	T	D	G	V	.	.	.	.	F	S	M	D	G	V	I	A	N	L	K	G	V	C
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template Conservation
Template Sequence	G	X	P	Y	D	T	L	H	D	I	I	G	X	D	D	S	K	K	V	G	S	L	R	E	Y	G	V	K	Y	K	X	V	D	L	K	D	G	K	V	D	I	N	T	V	K	E	E	L	K	K	D	D	S	I	K	L	I	H	I	Q	R	S	T	G	Y	G	W	R	K	S	L	R	I	A	E	I	A	E	I	I
Template Known Secondary structure	S	S			G	G	G					T			T	T			S			T	G	G	G	T									B	T	T	B														T	T								S	S			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

	198	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270
Predicted Secondary structure								.	.																																													.	.	.																	.	.
Query SS confidence								.	.																																													.	.	.																	.	.
Query Sequence	D	L	A	D	K	Y	D	.	.	A	L	V	M	V	D	D	S	H	A	V	G	F	V	G	E	N	G	R	G	S	H	E	Y	C	D	V	M	G	R	V	D	I	I	T	G	T	L	G	K	A	L	G	G	.	.	.	A	S	G	G	Y	T	A	A	R	K	E	V	V	E	W	L	.	.	R	Q	R	S	R	P
Query Conservation								.	.																																													.	.	.																	.	.
Alig confidence								.	.																						.	.	.	.	.	.	.	.																.	.	.																	.	.
Template Conservation																															.	.	.	.	.	.	.	.
Template Sequence	K	S	I	R	E	V	N	E	N	V	I	V	F	V	D	N	C	Y	G	E	F	V	E	E	K	E	P	T	D	V	.	.	.	.	.	.	.	.	G	A	D	I	I	A	G	S	L	I	K	N	I	G	G	G	I	A	T	T	G	G	Y	I	A	G	K	E	E	Y	V	T	Q	A	T	F	R	V	T	V	P	G
Template Known Secondary structure								S	S	S							T	T	T	T	T	T	S	S	S		G	G	G	G	.	.	.	.	.	.	.	.	T		S						T	T	S	G	G	G	T	T	T			S																			S		T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.
Template SS confidence
	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.									.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

	271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.						.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence	Y	L	F	S	N	S	L	A	P	A	I	V	A	A	S	I	K	V	L	E	M	V	E	A	G	S	E	L	R	D	R	L	W	A	N	A	R	Q	F	R	E	Q	M	S	A	A	G	F	T	L	A	G	A	D	H	A	.	.	.	.	.	I	I	P	V	M	L	G	D	A	V	V	A	Q	K	F	A	R	E	L
Query Conservation																																																									.	.	.	.	.
Alig confidence											.	.	.																																												.	.	.	.	.
Template Conservation											.	.	.
Template Sequence	I	G	G	E	C	G	S	T	F	G	.	.	.	V	X	R	S	L	Y	E	G	L	F	X	A	P	H	V	T	I	E	A	V	K	G	A	V	F	C	A	R	I	X	E	L	A	G	F	D	V	L	P	K	Y	N	D	K	R	T	D	I	I	Q	A	I	K	F	N	D	E	K	K	L	I	D	F	I	K	G	I
Template Known Secondary structure	T	G	G	G					T	T	.	.	.																																		T					S		T	T	S			S	S	S								S
Template Predicted Secondary structure											.	.	.
Template SS confidence
	275	.	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

	346	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	352	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions