Job Description P0AB77 Confidence 100.00% Date Thu Jan 5 11:14:48 GMT 2012 Rank 12 Aligned Residues 357 % Identity 17% Template c3dxvA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:alpha-amino-epsilon-caprolactam racemase; PDBTitle: the crystal structure of alpha-amino-epsilon-caprolactam racemase from2 achromobacter obae Resolution 2.21 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		L	F	K	E	E	R	I	I	T	S	A	Q	Q	A	D	I	T	V	A	D	G	S	H	V	I	N	F	C	A	N	.	.	.	N	Y	L	G	L	A	N	H	P	D	L	I	A	A	A	K	A	G	M	D	S	H	G	F	G	M	A	S	V	R	F	I	C	G	T	Q	D	S	H	K	E	L	E	Q	K	L	A
Query Conservation																																.	.	.
Alig confidence																																.	.	.					.																								.	.	.	.
Template Conservation																																							.																								.	.	.	.
Template Sequence		L	R	F	F	P	L	A	I	S	G	G	R	G	A	R	L	I	E	E	N	G	R	E	L	I	D	L	S	G	A	W	G	A	A	S	L	G	.	Y	G	H	P	A	I	V	A	A	V	S	A	A	A	A	N	P	A	G	A	T	I	L	.	.	.	.	S	A	S	N	A	P	A	V	T	L	A	E	R	L	L
Template Known Secondary structure				S	S									B	T					T	T	S						S	S	T	T	T	T	T		T	T		.	B	S														S		S		S		S	S	.	.	.	.	S	S
Template Predicted Secondary structure																																							.																								.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		98	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.													.	.	.	.
Predicted Secondary structure					.	.	.																				.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.																				.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	L	.	.	.	G	M	E	D	A	I	L	Y	S	S	C	F	D	A	N	G	G	L	F	.	.	.	E	T	L	L	G	A	E	D	A	I	I	S	D	A	L	N	H	A	S	I	I	D	G	V	R	L	C	K	A	K	R	Y	R	Y	A	N	.	.	.	.	.	.	.	.	.	.	.	.	N	D	M	Q
Query Conservation					.	.	.																				.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.																				.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	F	P	G	E	G	T	H	K	I	W	F	G	H	S	G	S	D	A	N	E	A	A	Y	R	A	I	V	K	A	T	G	R	S	G	V	I	A	F	A	G	A	Y	H	G	C	T	V	G	S	M	A	F	S	G	L	I	L	L	P	Y	P	D	P	Y	R	P	Y	R	N	D	P	T	G	D	A	I	L	T
Template Known Secondary structure			T	T	T		T	T	T							S	S																	S								T	T					S	S					T	T											S	S	S		B	T	T	B	T	T	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																			.	.	.	.																							.
Query SS confidence																																			.	.	.	.																							.
Query Sequence		E	L	E	A	R	L	K	E	A	R	E	A	G	A	R	H	V	L	I	A	T	D	G	V	F	S	M	D	G	V	I	A	N	.	.	.	.	L	K	G	V	C	D	L	A	D	K	Y	D	A	L	V	M	V	D	D	S	H	A	.	V	G	F	V	G	E	N	G	R	G	S	H	E	Y	C	D	V	M	G	R
Query Conservation																																			.	.	.	.																							.
Alig confidence										.	.																								.	.	.	.																							.										.	.	.	.
Template Conservation										.	.																																																												.	.	.	.
Template Sequence		L	L	T	E	K	L	A	A	.	.	V	P	A	G	S	I	G	A	A	F	I	E	P	I	Q	S	D	G	G	L	I	V	P	P	D	G	F	L	R	K	F	A	D	I	C	R	A	H	G	I	L	V	V	C	D	E	V	K	V	G	L	A	R	S	G	R	L	H	C	.	.	.	.	F	E	H	E	G	F	V
Template Known Secondary structure									T	.	.	S		T	T									S	S	B	S	T	T	T	S	B				T	T												T	T								T	T	T		T	T	T	T	S	S	S	S	G	.	.	.	.	G	G	G	T	T
Template Predicted Secondary structure										.	.																																																												.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.					.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	I	I	T	G	T	L	G	K	A	L	G	G	A	S	G	G	Y	T	A	A	R	K	E	V	V	E	W	L	R	Q	R	S	R	P	Y	L	F	S	N	S	L	A	P	A	I	V	A	A	S	I	K	V	L	E	M	V	E	A	G	S	E	L	R	D	R	L	W	A	N	A	R	Q	F	R	E	Q	M	S
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		P	D	I	L	V	L	G	K	G	L	G	.	G	G	L	P	L	S	A	V	I	A	P	A	E	I	L	D	C	A	S	A	F	A	M	Q	T	L	H	G	N	P	I	S	A	A	A	G	L	A	V	L	E	T	I	D	R	D	D	L	P	A	M	A	E	R	K	G	R	L	L	R	D	G	L	S	E	L	A	K
Template Known Secondary structure			S						G	G	G	G	.	T	T	S													T	S		S	S	S	S			T	T	T	T																		T	T
Template Predicted Secondary structure													.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		315	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.									.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure								.													.	.	.	.	.	.	.	.
Query SS confidence								.													.	.	.	.	.	.	.	.
Query Sequence		A	A	G	F	T	L	.	A	G	A	D	H	A	I	I	P	V	M	L	.	.	.	.	.	.	.	.	G	D	A	V	V	A	Q	K	F	A	R	E	L	Q	K	E	G	I	Y	V	T	G	F	F	Y	P	V	V	P	K	G	Q	A	R	I	R	T	Q	M	S	A	A	H	T	P	E	Q	I	T	R	A	V	E
Query Conservation								.													.	.	.	.	.	.	.	.
Alig confidence								.													.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		R	H	P	L	I	G	D	I	R	G	R	G	L	A	C	G	M	E	L	V	C	D	R	Q	S	R	E	P	A	R	A	E	T	A	K	L	I	Y	R	A	Y	Q	L	G	L	V	V	Y	Y	V	G	M	N	G	.	.	.	.	.	N	V	L	E	F	T	P	P	L	T	I	T	E	T	D	I	H	K	A	L	D
Template Known Secondary structure				T	T								T	T										T	T	T	T																		T							S	T	T	S	.	.	.	.	.									T	T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.						.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		386	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	T	R	I	G	K	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	D	R	A	F	S	E	L
Template Known Secondary structure									T	G
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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