Job Description P0AB77 Confidence 99.95% Date Thu Jan 5 11:14:48 GMT 2012 Rank 174 Aligned Residues 345 % Identity 14% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

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		45	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure												.																		.																																	.	.	.	.
Query SS confidence												.																		.																																	.	.	.	.
Query Sequence		I	N	F	C	A	N	N	Y	L	G	.	L	A	N	H	P	D	L	I	A	A	A	K	A	G	M	D	S	.	H	G	F	G	M	A	S	V	R	F	I	C	G	T	Q	D	S	H	K	E	L	E	Q	K	L	A	A	F	L	G	M	E	.	.	.	.	D	A	I	L	Y	S	S	C	F	D	A	N	G	G	L
Query Conservation												.																		.																																	.	.	.	.
Alig confidence												.																		.																																	.	.	.	.
Template Conservation
Template Sequence		I	K	T	G	H	P	R	Y	F	N	Q	L	S	T	G	L	D	M	V	G	L	A	A	D	W	L	T	S	T	A	N	T	N	M	F	T	Y	E	I	A	P	V	F	V	L	L	E	Y	V	T	L	K	K	M	R	E	I	I	G	W	P	G	G	S	G	D	G	I	F	S	P	G	G	A	I	S	N	M	Y	A
Template Known Secondary structure				T	T	S	T	T			S	S	S	S																					S	S		T	T	T																				T		G	G	G		S						S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		119	120	.	.	.	.															.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.						.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.							.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.							.	.	.	.	.
Query Sequence		F	E	T	L	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	D	A	I	I	S	D	A	L	N	H	A	S	I	I	D	G	V	R	L	C	K	A	.	.	.	K	R	Y	R	Y	A	.	.	.	.	.	N	N	D	M	Q	E	L	E	A	R	L	K	E	A	R	E	A	G	A	R	H	V
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.							.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.							.	.	.	.	.
Template Conservation
Template Sequence		M	M	I	A	R	F	K	M	F	P	E	V	K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S	L	K	K	G	A	A	A	L	G	I	G	T	D	S	V	I	L	I	K	C	D	E	R	G	K	M	I	P	S	D	L	E	R	R	I	L	E	A	K	Q	K	G	F	V	P	F
Template Known Secondary structure											T	T						G	G	G	S									T	T	S		T									T	T	S		G	G	G						B		T	T	S		B															T	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	T	D	G	V	F	S	M	D	G	V	I	A	N	L	K	G	V	C	D	L	A	D	K	Y	D	A	L	V	M	V	D	D	S	H	A	V	G	F	V	G	E	N	G	R	G	S	H	E	Y	C	D	V	M	G	R	V	D	I	I	T	G	T	L	G	K	A	L	G	G	A	S	G	G	Y	T	A	A
Query Conservation
Alig confidence																																																.	.
Template Conservation																																																.	.
Template Sequence		L	V	S	A	T	A	G	T	T	V	Y	G	A	F	D	P	L	L	A	V	A	D	I	C	K	K	Y	K	I	W	M	H	V	D	A	A	W	G	G	G	L	L	M	S	R	K	.	.	H	K	W	K	L	S	G	V	E	R	A	N	S	V	T	W	N	P	H	M	M	G	V	P	L	Q	C	S	A	L	L	V
Template Known Secondary structure							B	S		T	T	T			B														T								T	T	G	G	G	G	G	G		T	T	.	.	T	G	G	G	G	T	T	G	G	G		S												S	S
Template Predicted Secondary structure																																																.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.			.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		257	.									.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320					.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.																																																															.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.																																																															.	.	.	.
Query Sequence		R	K	.	.	.	.	.	.	.	.	E	V	V	E	W	L	R	Q	R	S	R	P	Y	L	F	S	N	S	L	A	P	A	I	V	A	A	S	I	K	V	L	E	M	V	E	A	G	S	E	L	R	D	R	L	W	A	N	A	R	Q	F	R	E	Q	M	S	A	A	G	F	T	L	.	.	.	.	A	G	A	D
Query Conservation				.	.	.	.	.	.	.	.																																																															.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.																																																															.	.	.	.
Template Conservation
Template Sequence		R	E	E	G	L	M	Q	N	C	N	Q	M	H	D	L	S	Y	D	T	G	D	K	A	L	Q	C	G	R	H	V	D	V	F	K	L	W	L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I	K	N	R	E	G	Y	E	M	V	F	D	G	K	P	Q
Template Known Secondary structure		S	S	T	T											G	G	G			G	G	G	S	S		S	S																																								T	S	T	T				S	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.														.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query Sequence		H	A	I	I	P	V	M	L	G	D	A	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	K	F	A	R	E	L	Q	K	E	G	I	Y	V	T	G	F	F	Y	P	V	V	P	K	G	Q	A	R	I	R	T	Q	M	.	S	A	A	H	T	P	E	Q	I	T	R	A	V	E	A	F	T	R	I
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																		.
Template Conservation																																											.	.
Template Sequence		H	T	N	V	C	F	W	Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V	A	P	V	I	K	A	R	M	M	E	Y	G	T	T	M	.	.	V	S	Y	Q	P	L	G	D	K	V	N	F	F	R	M	V	I	S	N	P	A	A	T	H	Q	D	I	D	F	L	I	E	E	I	E	R	L
Template Known Secondary structure		S	S									T	T	T	T	T									T	T													T	S			.	.							T	T												T	T
Template Predicted Secondary structure																																											.	.
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.			.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.
		391	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		582	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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