Phyre 2 alignment of P0AB77 with c2jisA

Job Description P0AB77
Confidence 99.95% Date Thu Jan 5 11:14:48 GMT 2012

Rank 161 Aligned Residues 348

% Identity 15% Template c2jisA_

PDB info PDB header:lyase Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase; PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.

Resolution 1.6 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	45	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure														.																											.																							.	.
Query SS confidence														.																											.																							.	.
Query Sequence	I	N	F	C	A	N	N	Y	L	G	L	A	N	.	H	P	D	L	I	A	A	A	K	A	G	M	D	S	H	G	F	G	M	A	S	V	R	F	I	C	.	G	T	Q	D	S	H	K	E	L	E	Q	K	L	A	A	F	L	G	M	E	D	A	.	.	I	L	Y	S	S	C	F	D	A	N	G	G	L	F	E
Query Conservation														.																											.																							.	.
Alig confidence														.																											.																							.	.
Template Conservation
Template Sequence	V	K	T	G	H	P	R	F	F	N	Q	L	F	S	G	L	D	P	H	A	L	A	G	R	I	I	T	E	S	L	N	T	S	Q	Y	T	Y	E	I	A	P	V	F	V	L	M	E	E	E	V	L	R	K	L	R	A	L	V	G	W	S	S	G	D	G	I	F	C	P	G	G	S	I	S	N	M	Y	A	V	N
Template Known Secondary structure			T	T	S	T	T			S	S	S																						T	T		T	T	T																				T		S	S							S	S
Template Predicted Secondary structure
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.

	121	.	.	.															.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.						.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.							.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.							.	.	.	.	.
Query Sequence	T	L	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	D	A	I	I	S	D	A	L	N	H	A	S	I	I	D	G	V	R	L	C	K	A	.	.	.	K	R	Y	R	Y	A	.	.	.	.	.	N	N	D	M	Q	E	L	E	A	R	L	K	E	A	R	E	A	G	A	R	H	V	L	I
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.							.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.							.	.	.	.	.
Template Conservation
Template Sequence	L	A	R	Y	Q	R	Y	P	D	C	K	Q	R	G	L	R	T	L	P	P	L	A	L	F	T	S	K	E	C	H	Y	S	I	Q	K	G	A	A	F	L	G	L	G	T	D	S	V	R	V	V	K	A	D	E	R	G	K	M	V	P	E	D	L	E	R	Q	I	G	M	A	E	A	E	G	A	V	P	F	L	V
Template Known Secondary structure								T	T						G	G	G	S									T	T	S		T									T	T	S		G	G	G						B		T	T	S		B															T	T
Template Predicted Secondary structure
Template SS confidence
	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.

	179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	T	D	G	V	F	S	M	D	G	V	I	A	N	L	K	G	V	C	D	L	A	D	K	Y	D	A	L	V	M	V	D	D	S	H	A	V	G	F	V	G	E	N	G	R	G	S	H	E	Y	C	D	V	M	G	R	V	D	I	I	T	G	T	L	G	K	A	L	G	G	A	S	G	G	Y	T	A	A	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	A	T	S	G	T	T	V	L	G	A	F	D	P	L	E	A	I	A	D	V	C	Q	R	H	G	L	W	L	H	V	D	A	A	W	G	G	S	V	L	L	S	Q	T	H	R	H	L	L	D	G	I	Q	R	A	D	S	V	A	W	N	P	H	K	L	L	A	A	G	L	Q	C	S	A	L	L	L	Q	D	T
Template Known Secondary structure				B	S		T	T	T			B														T								T	T	G	G	G	G	G	G		T	T	T	G	G	G	G	T	T	G	G	G		S						T	T	S	T	T				S								S
Template Predicted Secondary structure
Template SS confidence
	242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.											.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320			.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																																																.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.																																																.	.
Query Sequence	E	V	V	E	W	L	R	Q	R	S	R	P	Y	L	F	.	.	.	.	.	.	.	.	.	.	S	N	S	L	A	P	A	I	V	A	A	S	I	K	V	L	E	M	V	E	A	G	S	E	L	R	D	R	L	W	A	N	A	R	Q	F	R	E	Q	M	S	A	A	G	F	T	L	.	.	A	G	A	D	H	A
Query Conservation																.	.	.	.	.	.	.	.	.	.																																																.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																																																.	.
Template Conservation
Template Sequence	S	N	L	L	K	R	C	H	G	S	K	F	Y	D	V	A	L	D	T	G	D	K	V	V	Q	C	G	R	R	V	D	C	L	K	L	W	L	M	W	K	A	Q	G	D	Q	G	L	E	R	R	I	D	Q	A	F	V	L	A	R	Y	L	V	E	E	M	K	K	R	E	G	F	E	L	V	M	E	P	E	F	V
Template Known Secondary structure	S												S		G	G	G			G	G	G		S		S	S																																								T	S	T	T				S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
	322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.

	327	.	.	330	.	.	.	.																	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Query Sequence	I	I	P	V	M	L	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	V	A	Q	K	F	A	R	E	L	Q	K	E	G	I	Y	V	T	G	F	F	Y	P	V	V	P	K	G	Q	A	R	I	R	T	Q	M	.	S	A	A	H	T	P	E	Q	I	T	R	A	V	E	A	F	T	R
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.																		.
Template Conservation																																											.	.
Template Sequence	N	V	C	F	W	F	V	P	P	S	L	R	G	K	Q	E	S	P	D	Y	H	E	R	L	S	K	V	A	P	V	L	K	E	R	M	V	K	E	G	S	M	M	.	.	I	G	Y	Q	P	H	G	T	R	G	N	F	F	R	V	V	V	A	N	S	A	L	T	C	A	D	M	D	F	L	L	N	E	L	E	R
Template Known Secondary structure									G	G	G	T	T		T	T	S	T	T							T													T	S			.	.							T	T												T	T
Template Predicted Secondary structure																																											.	.
Template SS confidence
	411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.			.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.

	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	G	K	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	L	G	Q	D	L
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
	489	490	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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