Job Description P76137 Confidence 99.84% Date Wed Jan 25 15:21:05 GMT 2012 Rank 4 Aligned Residues 192 % Identity 16% Template c2vqiA_ PDB info PDB header:transport Chain: A: PDB Molecule:outer membrane usher protein papc; PDBTitle: structure of the p pilus usher (papc) translocation pore Resolution 3.2 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.
Predicted Secondary structure																			.																													.																														.	.
Query SS confidence																			.																													.																														.	.
Query Sequence		M	S	G	Y	T	V	K	P	P	T	G	D	T	N	E	Q	T	.	Q	F	I	D	Y	F	N	L	F	Y	S	K	R	G	Q	E	Q	I	S	I	S	Q	Q	L	G	N	Y	G	.	T	T	F	F	S	A	S	R	Q	S	Y	W	N	T	S	R	S	D	Q	Q	I	S	F	G	L	N	V	P	F	.	.	G	D
Query Conservation																			.																													.																														.	.
Alig confidence																			.																													.																				.										.	.
Template Conservation																																																																				.
Template Sequence		F	A	G	Y	R	F	S	E	R	N	Y	X	T	X	E	Q	Y	L	N	A	R	Y	R	N	D	Y	S	S	R	E	K	E	X	Y	T	V	T	L	N	K	N	V	A	D	W	N	T	S	F	N	L	Q	Y	S	R	Q	T	Y	W	D	I	R	K	T	D	Y	.	Y	T	V	S	V	N	R	Y	F	N	V	F	L
Template Known Secondary structure										T	T													S																				T	T	T	T													S	S	S						.											S	S	S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.		.	.	.	.	.	.	510	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	T	S	L	N	Y	S	Y	S	N	N	I	W	Q	N	D	R	D	H	L	L	A	F	T	L	N	V	P	F	S	H	W	M	R	T	D	S	Q	S	A	F	R	N	S	N	A	S	Y	S	M	S	N	D	L	K	G	G	M	T	N	L	S	G	V	Y	G	T	L	L	P	D	N	N	L	N	Y	S	V	Q
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	V	A	V	G	L	S	A	S	R	S	K	Y	L	G	R	D	N	D	S	A	Y	L	R	I	S	V	P	L	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	A	S	Y	S	G	S	X	S	N	D	R	Y	V	N	X	A	G	Y	T	D	T	F	N	D	G	L	D	S	Y	S	L	N
Template Known Secondary structure																T	T															T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T													G	G	G	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.															550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		V	G	N	T	H	G	G	N	T	S	S	G	T	S	G	Y	S	S	L	N	Y	R	G	A	Y	G	N	T	N	V	G	Y	S	R	S	G	.	D	S	S	Q	I	Y	Y	G	M	S	G	G	I	I	A	H	A
Query Conservation																																						.
Alig confidence							.	.																														.
Template Conservation							.	.
Template Sequence		A	G	L	N	S	.	.	G	L	T	S	Q	R	Q	I	N	A	Y	Y	S	H	R	S	P	L	A	N	L	S	A	N	I	A	S	L	Q	K	G	Y	T	S	F	G	V	S	A	S	G	G	A	T	I	T	G
Template Known Secondary structure							.	.																	T	T											T	T	S
Template Predicted Secondary structure							.	.
Template SS confidence
		584	.	.	.	.			.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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