 |
Job Description | P0AB24 | Confidence | 96.14% | Date | Thu Jan 5 11:14:26 GMT 2012 |
Rank | 54 | Aligned Residues | 69 |
% Identity | 13% | Template | d3dtub1 |
SCOP info | Cupredoxin-like
| Cupredoxins
| Periplasmic domain of cytochrome c oxidase subunit II
|
Resolution | 2.15 |
|
 |
  |   |
42 | . | . | . | . | . | . | . | 50 | . | . | |
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | |
. | . | . | . | . | 100 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 110 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
| . |
|
|
|
|  |  |  |  |  | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | P | M | T | I | T | V | N | A | G | K | . |
T | Q | F | I | I | Q | N | H | S | Q | K | A | L | E | W | E | I | L | K | G | V | M | V | V | E | E | R | E | N | I | A | P | G | F | S | Q | K | M | T | A | N | L | . |
Q | P | G | E | Y | D | M | T | C | . |
. |
. |
. |
. |
G | L | L | T | N | P | K | G | K | L | I |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|
|   | . |   |   |
|   |
|   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |
|   |
|   |
|   |
|
|   |
|   |   |
|
|   |   |
| . |   |   |
|
|
|   |   |   |
| . | . | . | . | . |   |   |   |   |   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|
|
|
|   |
|   |   |
|   |   |   |
|
| . |
|   |
|
|
|
|
|
|   |
|
|   | . | . | . | . |   |   |   |
|   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |
|   |
|
|   |
|
|   |   |
|   |   |   |
|   |
Template Sequence |   |
T | D | T | A | M | V | V | P | V | N | K | T | V | V | V | Q | V | T | . |
G | A | D | V | I | H | S | W | T | V | P | A | . |
. |
. |
. |
F | G | V | K | Q | D | A | V | P | G | R | L | A | Q | L | W | F | R | A | E | R | E | G | I | F | F | G | Q | C | S | E | L | C | G | I | S | H | A | Y | M | P | I | T | V | K |
Template Known Secondary structure |   |
B | S | S |
|  |  |  |  | T | T | S |  |  |  |  |  |  |  | . |  | S | S | S |
|  |  |  |  |  | G | G | . | . | . | . | G | T |  |  |  |  |  |
| B | T |
|
|  |  |  |  |  |  |
|
| S |
|  |  |  |  |  |
|
|
| S |
|
| S | T | T | G | G | G |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | . |  |
|
|
|  |  |  |  |  |  |
|
| . | . | . | . |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
194 | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | |
. | . | . | . | . | . | . | . | 220 | . | . | . | |
|
|
|
. | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . |
  |
  |   |
115 |
Predicted Secondary structure |   |
 |
Query SS confidence |   |
|
Query Sequence |   |
V |
Query Conservation |   |
|
Alig confidence |   |
|
Template Conservation |   |
|
Template Sequence |   |
V |
Template Known Secondary structure |   |
 |
Template Predicted Secondary structure |   |
 |
Template SS confidence |   |
|
  |   |
269 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|