|   |
28 | . | 30 | . | . | . | . | . | . | . | . | |
. | 40 | . | . | . | . | . | . | . | . | |
. | 50 | . | . | |
. | . | . | . | . | . | . | 60 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 70 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|  | . |  |  |  |  |  |  |  |
|
|
|
|  | . | . | . | . | . |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
Query Sequence |   |
D | V | P | Q | V | K | V | T | V | T | D | . |
K | Q | C | E | P | M | T | I | T | V | . |
N | A | G | K | . |
T | Q | F | I | I | Q | N | H | S | Q | K | A | . |
. |
. |
. |
. |
L | E | W | E | I | L | K | G | V | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
M | V |
Query Conservation |   |
  |   |   |   |
|   |
|
|   |   |
| . |   |   |
|   |   |   |   |   |   |   | . |   |
|
|   | . |   |   |
|   |
|   |
|   |   |   |   |   | . | . | . | . | . |   |
|   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
Template Conservation |   |
  |   |   |
|
|   |
|   |
|   |
|   |
|   |
|   |
|   |   |
|   |
|   |   |
|
|
|   |
|   |   |   |   |   |
|   |
|   |
|   |
|   |   |
|   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | E | C | K | V | T | V | D | S | T | D | Q | M | S | F | N | T | K | D | I | A | I | D | K | S | C | K | T | F | T | V | E | L | T | H | S | G | S | L | P | K | N | V | M | G | H | N | L | V | I | S | K | E | A | D | M | Q | P | I | A | T | D | G | L | S | A | G | I | D | K | Q | Y | L | K | D | G | D | A | R | V |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |
| T | T | S |
| B | S |
| S |  |  |  |  |
| T | T |
| S |  |  |  |  |  |  |  |  |
| S | S |
|
|  |  |  |  |
| B |
|
|  |  |  |  | G | G | G |  |  |  |  |  |  |  |  | T | T | T |
| G | G | G | T | T | S |
| T | T |
| T | T |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | |
|
|
|
. | . | . | . | . | . | 100 | . | . | . | . | . | |
|
|
. | . | . | . | 110 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . |
|
|
|
|
|  |  |  |  |  |
|
| . | . | . |
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | E | E | R | E | N | I | A | P | G | F | S | Q | K | M | T | A | N | . |
. |
. |
. |
L | Q | P | G | E | Y | D | M | T | C | G | L | . |
. |
. |
L | T | N | P | K | G | K | L | I | V |
Query Conservation |   |
  |   |
|   |
|   |
|   |
|
|   |
|   |   |
|
|   |   | . | . | . | . |
|   |   |
|
|
|   |   |   |
|   |   | . | . | . |   |   |   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |
|
|
|
|   |   |
|
|
|
|
|
|   |   |   |   |   |
|   |
|   |
|   |
|
|
|
|
|
|   |
|
|
|   |
|   |
|   |
|
Template Sequence |   |
I | A | H | T | K | V | I | G | A | G | E | K | D | S | V | T | F | D | V | S | K | L | A | A | G | E | K | Y | G | F | F | C | S | F | P | G | H | I | S | M | M | K | G | T | V | T | L |
Template Known Secondary structure |   |
 |  |  |
|
|
| B |
| T | T |
|  |  |  |  |  |  |  | G | G | G | S |
| T | T | S |
|  |  |  |  |
|
| S | T | T |
| G | G | G | S |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . |
  |