Job Description P0AB24 Confidence 63.80% Date Thu Jan 5 11:14:26 GMT 2012 Rank 143 Aligned Residues 85 % Identity 19% Template c1sddA_ PDB info PDB header:blood clotting Chain: A: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		46	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80																	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.												.
Predicted Secondary structure									.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	V	N	A	G	K	.	T	Q	F	I	I	Q	N	H	S	Q	K	A	L	E	W	E	I	L	K	G	V	M	V	V	E	E	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	A	P	G	F	S	Q	K	M	T	A	N	L	Q	P	.	.	.	.	.	.	.	.	.	.	.	G
Query Conservation									.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.
Template Sequence		L	Y	A	E	V	G	D	I	M	K	V	H	F	K	N	K	A	H	K	P	L	S	I	H	.	A	Q	G	I	K	Y	S	K	F	S	E	G	A	S	Y	S	D	H	T	L	P	M	E	K	M	D	D	A	V	A	P	G	Q	E	Y	T	Y	E	W	I	I	S	E	H	S	G	P	T	H	D	D	P	P	C	L
Template Known Secondary structure						T	T											S	S	S		B				.			S	S				T	T	T	S				S										T	T	T		B		T	T											G	G	G	S			S	S	S		S
Template Predicted Secondary structure																										.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		98	.	100	.	.	.	.	.	.	.							.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence		E	Y	D	M	T	C	G	L	L	T	.	.	.	.	.	.	N	P	K	G	K	L	I	V	K	G	E	A	T	A	D	A	A	Q	S	D	A	L	L	S
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.
Template Conservation
Template Sequence		T	H	I	Y	Y	S	Y	V	N	L	V	E	D	F	N	S	G	L	I	G	P	L	L	I	C	K	K	G	T	L	T	E	D	G	T	Q	K	M	F	E
Template Known Secondary structure									S	S	S						T	T										T	T		B		T	T	S	S	B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions