Job Description P0AB24 Confidence 95.18% Date Thu Jan 5 11:14:26 GMT 2012 Rank 63 Aligned Residues 85 % Identity 18% Template c1qleB_ PDB info PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment Resolution 3.0 Å

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		42	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure													.																																											.										.	.	.	.	.
Query SS confidence													.																																											.										.	.	.	.	.
Query Sequence		E	P	M	T	I	T	V	N	A	G	K	.	T	Q	F	I	I	Q	N	H	S	Q	K	A	L	E	W	E	I	L	K	G	V	M	V	V	E	E	R	E	N	I	A	P	G	F	S	Q	K	M	T	A	N	L	.	Q	P	G	E	Y	D	M	T	C	.	.	.	.	.	G	L	L	T	N	P	K	G	K	L	I
Query Conservation													.																																											.										.	.	.	.	.
Alig confidence													.											.									.	.	.	.																				.										.	.	.	.	.
Template Conservation																								.									.	.	.	.
Template Sequence		T	D	N	P	V	V	V	P	V	G	K	K	V	L	V	Q	V	T	A	T	D	V	.	I	H	A	W	T	I	P	A	.	.	.	.	F	A	V	K	Q	D	A	V	P	G	R	I	A	Q	L	W	F	S	V	D	Q	E	G	V	Y	F	G	Q	C	S	E	L	C	G	I	N	H	A	Y	M	P	I	V	V	K
Template Known Secondary structure		B	S	S						T	T	S								B	S	S	S	.							T	T	.	.	.	.	T	T							T	T					B					S	S										S			S	T	T	S	S	S
Template Predicted Secondary structure																								.									.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	G	E	A	T	A	D	A	A	Q	S	D	A	L	L	S	L	G	G	A	I	T	A	Y	K	A	Y	V	M	A	E	T	T	Q
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	E	K	Y	E	A	W	L	A	G	A	K	E	E
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.																			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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