|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | L | H | T | L | H | R | S | P | W | L | T | D | F | A | A | L | L | R | L | L | S | E | G | D | E | L | L | L | L | Q | D | G | V | T | A | A | V | D | G | N | R | Y | L | E | S | L | R | N | A | P | I | K | V | Y | A | L | N | E | D | L | I | A | R | G | L | T | G | Q | I | S | N | D | I | I | L | I | D | Y | T |
Query Conservation |   |
|
|
|   |
|   |   |
|
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|
|   |   |
|
|   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|   |   |
|
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|
|   |   |
|
|   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |
|
|
|   |
Template Sequence |   |
M | L | H | T | L | H | R | S | P | W | L | T | D | F | A | A | L | L | R | L | L | S | E | G | D | E | L | L | L | L | Q | D | G | V | T | A | A | V | D | G | N | R | Y | L | E | S | L | R | N | A | P | I | K | V | Y | A | L | N | E | D | L | I | A | R | G | L | T | G | Q | I | S | N | D | I | I | L | I | D | Y | T |
Template Known Secondary structure |   |
|  |  |  |  |
| S |
| G | G | G | S |
|  |  |  |  |  |  | T |
|
| T | T |
|  |  |  |  |
| G | G | G | G | G | G | G | B | T | T |
| T | T |  |  |  |  |  | T | S | S | S |  |  |  |  |  |  |  |  |  |  |  | T | T |
| T | T | S | B |
| T | T | S |  |  |  |
|  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | F | V | R | L | T | V | K | H | P | S | Q | M | A | W |
Query Conservation |   |
  |
|
|   |
|
|   |   |
|   |   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|   |   |
|   |   |   |
|
|
|
Template Sequence |   |
D | F | V | R | L | T | V | K | H | P | S | Q | M | A | W |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
| S |
|  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . |
  |