Job Description P0A991 Confidence 96.32% Date Thu Jan 5 11:09:38 GMT 2012 Rank 155 Aligned Residues 180 % Identity 22% Template c3fluD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis Resolution 2.00 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.															.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	I	V	E	L	A	I	E	A	G	C	N	C	V	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	G	V	L	A	S	V	S	R	R	Y	A	H	R	I	P	F	L	V	K	L	N	H	N	E	T	L	S	Y	P	N	T	Y	D	Q	T	L	Y	A	S	V	E	Q	A	F	N	M	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.
Template Sequence		R	D	L	I	D	W	H	I	E	N	G	T	D	G	I	V	A	V	G	T	T	G	E	S	A	T	L	S	V	E	E	H	T	A	V	I	E	A	V	V	K	H	V	A	K	R	V	P	V	I	A	G	T	G	A	N	N	T	.	.	.	.	.	.	.	.	V	E	A	I	A	L	S	Q	A	A	E	K	A	G
Template Known Secondary structure											T	T							S	S	T	T	T	T	G	G	G	S																	T	T	S	S									S	S		.	.	.	.	.	.	.	.														T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.									.	.	.	.	.	.	.	90	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure															.																															.	.
Query SS confidence															.																															.	.
Query Sequence		A	V	A	V	G	A	T	I	Y	F	G	S	E	.	E	S	R	R	Q	I	E	E	I	S	A	A	F	E	R	A	H	E	L	G	M	V	T	V	L	W	A	Y	L	R	.	.	N	S	A	F	K	K	D	G	V	D	Y	H	V	S	A	D	L	T	G	Q	A	N	H	L	A	A	T	I	G	A	D	I	V	K
Query Conservation															.																															.	.
Alig confidence															.																	.	.	.												.	.						.	.	.	.	.	.	.	.	.	.	.	.									.					.
Template Conservation																																.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.									.					.
Template Sequence		A	D	Y	T	L	S	V	V	P	Y	Y	N	K	P	S	Q	E	G	I	Y	Q	H	F	K	T	I	A	E	A	T	.	.	.	S	I	P	M	I	I	Y	N	V	P	G	R	T	V	V	S	M	T	.	.	.	.	.	.	.	.	.	.	.	.	N	D	T	I	L	R	L	A	.	E	I	P	N	.	I	V	G
Template Known Secondary structure			S									S	S																	T		.	.	.		S												S	S				.	.	.	.	.	.	.	.	.	.	.	.								T	.	T	S	T	T	.
Template Predicted Secondary structure																																.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.									.					.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.													.	.	.	.	.	150	.	.		.	.	.	.		.	.	.
		238	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		Q	K	M	A	.	E	N	N	G	G	Y	K	A	I	N	Y	G	Y	T	D	D	R	V	Y	S	K	L	T	S	E	N	P	I	D	L	V	R	Y	Q	L	A	N	C	Y	M	G	R	A	G	L	I	N	S	G	G	A	A	G	G	E	T	D	L	S	D	A	V	R	T	A	V	I	N	K	R	A	G	G	M	G
Query Conservation						.
Alig confidence						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.										.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.										.	.	.	.	.	.	.
Template Sequence		V	K	E	A	S	G	N	I	G	S	N	I	E	L	I	N	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	G	F	V	V	L	S	G	D	.	.	.	D	H	T	A	L	P	F	M	L	.	.	.	.	.	.	.	C	G	G	H	G
Template Known Secondary structure						S													S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T								.	.	.	G	G	G							.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.										.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																													.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.								.	.	.	200	.
		317	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		L	I	L	G	.	R	K	A	F	K	K	S	M	A	D	G	V	K	L	I	N	A	V	Q	D
Query Conservation						.
Alig confidence						.							.	.	.
Template Conservation													.	.	.
Template Sequence		V	I	T	V	A	A	N	A	A	P	K	.	.	.	L	F	A	D	M	C	R	A	A	L	Q
Template Known Secondary structure					S	G	G	G	T				.	.	.
Template Predicted Secondary structure													.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions