Job Description P0A991 Confidence 92.82% Date Thu Jan 5 11:09:38 GMT 2012 Rank 224 Aligned Residues 162 % Identity 12% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.												.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		P	F	L	V	K	L	N	H	N	E	T	L	S	Y	P	N	T	Y	D	Q	T	L	Y	A	S	V	E	Q	A	F	N	M	G	A	V	A	V	G	A	T	I	Y	F	G	S	E	E	S	R	.	.	.	.	.	.	.	.	.	.	.	R	Q	I	E	E	I	S	A	A	F	E	R	A	H	E	.	L	G	M	V
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence													.	.	.	.	.	.	.	.																		.	.												.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation													.	.	.	.	.	.	.	.																		.	.
Template Sequence		P	I	A	L	Q	L	A	G	S	D	P	.	.	.	.	.	.	.	.	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	.	.	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P
Template Known Secondary structure		S								S			.	.	.	.	.	.	.	.													T	T		S		.	.									S							T		G	G	G	G	G	G														T	T		S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																		.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.									70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	L	W	A	Y	L	R	N	S	A	F	K	K	D	G	V	D	Y	H	V	S	A	D	L	T	G	Q	A	N	H	L	A	A	T	I	G	A	D	I	V	K	Q	K	M	A	E	N	N	G	G	Y	K	A	I	N	Y	G	Y	T	D	D	R	V	Y	S	K	L	T	S	E	N	P	I	D	L	V	R	Y	Q
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	V	K	X	R	L	G	L	E	G	K	E	.	.	.	.	.	.	.	.	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	.	.	.	.	.	.	.	.	.	.	.	.	R	E	I	P	P	L	R	H	D	W	V
Template Known Secondary structure								S		B	T	T			.	.	.	.	.	.	.	.															T	T									S		B		T	T	S		T	T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	G	T	S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.									.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.													.	.	180	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	N	C	Y	M	G	R	A	G	L	I	N	S	G	G	A	A	G	G	E	T	D	L	S	D	A	V	R	T	A	V	I	N	K	R	A	G	G	M	G	L	I	L	G	R	K	A	F	K	K	S
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.
Template Sequence		H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	K	.	.	.	.	.	.	.	.	R	V	D	G	V	X	L	G	R	A	V	Y	E	D	P
Template Known Secondary structure									T	T	S						S	S			S									T	.	.	.	.	.	.	.	.	T	S	S					S							G
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.									.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions