Job Description P0A991 Confidence 82.03% Date Thu Jan 5 11:09:38 GMT 2012 Rank 286 Aligned Residues 142 % Identity 14% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.															.	170						.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.								.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.								.	.	.
Query Sequence		Q	T	L	Y	A	S	V	E	Q	A	F	N	M	G	A	V	A	V	G	A	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	.	.	.	.	.	G	S	E	E	S	R	R	.	.	.	Q	I	E	E	I	S	A	A	F	E	R	A	H	E	L	G	M	V	T	V	L	W	A	Y	L	R	N
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.								.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.	.	.								.	.	.													.													.	.
Template Conservation																																																																			.													.	.
Template Sequence		Q	F	Y	V	D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	.	G	S	D	C	A	I	A	T	R	F	G	V	.	.
Template Known Secondary structure														T	T		S								T	T									T	T	T					S	T	T	S	S	S																				.	T	T	T	S									.	.
Template Predicted Secondary structure																																																																			.													.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.										.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.
Query Sequence		S	A	F	K	K	D	G	V	D	Y	H	V	S	A	D	L	T	G	Q	A	N	H	L	A	A	T	I	G	A	D	I	V	K	Q	.	.	.	.	.	.	.	.	.	K	M	A	E	N	N	G	G	Y	K	A	I	N	Y	G	Y	T	D	D	R	V	Y	S	K	L	T	S	E	N	P	I	D	L	V	R	Y	Q
Query Conservation																																				.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	D	T	V	Y	G	P	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	W	V
Template Known Secondary structure		.	.	.			S	S		T	T	S			T	T	T										T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.																				280	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		L	A	N	C	Y	M	G	R	A	G	L	I	N	S	G	G	A	A	G	G	E	T	D	L	S	D	A	V	R	T	A	V	I	N	K	R	A	G	.	G	M	G	L	I	L	G	R
Query Conservation																																								.
Alig confidence																						.	.	.	.	.							.	.	.					.
Template Conservation																						.	.	.	.	.							.	.	.
Template Sequence		K	L	V	K	Q	V	S	K	K	P	V	L	G	V	G	R	Y	T	D	P	.	.	.	.	.	E	K	M	I	E	I	.	.	.	V	T	K	G	Y	A	D	I	I	G	C	A	R
Template Known Secondary structure						T	T		S	S						S						.	.	.	.	.							.	.	.			T	T	S		S	B				S
Template Predicted Secondary structure																						.	.	.	.	.							.	.	.
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.				310	.	.	.	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions