Job Description P0AFP2 Confidence 100.00% Date Thu Jan 5 11:26:53 GMT 2012 Rank 2 Aligned Residues 100 % Identity 42% Template c3gx4X_ PDB info PDB header:dna binding protein/dna Chain: X: PDB Molecule:alkyltransferase-like protein 1; PDBTitle: crystal structure analysis of s. pombe atl in complex with dna Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		K	E	D	S	F	P	Q	R	V	W	Q	I	V	A	A	I	P	E	G	Y	V	T	T	Y	G	D	V	A	K	L	A	G	S	P	R	A	A	R	Q	V	G	G	V	L	K	R	L	P	E	G	S	T	L	P	W	H	R	V	V	N	R	H	G	T	I	S	L	T	G	P	.	.	D	L	Q	R	Q	R	Q	A
Query Conservation																																																																								.	.
Alig confidence																																																																								.	.
Template Conservation
Template Sequence		R	M	D	E	F	Y	T	K	V	Y	D	A	V	C	E	I	P	Y	G	K	V	S	T	Y	G	E	I	A	R	Y	V	G	M	P	S	Y	A	R	Q	V	G	Q	A	M	K	H	L	H	P	E	T	H	V	P	W	H	R	V	I	N	S	R	G	T	I	S	K	R	D	I	S	A	G	E	Q	R	Q	K	D	R
Template Known Secondary structure																T	S		T	T		B										T	T		T	T											T			T	T			S		G	G	G				T	T	S	B					S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		107	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		L	L	A	E	G	V	M	V	S	G	S	G	.	.	.	.	Q	I	D	L	Q	R	Y	R	W	N
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.
Template Conservation
Template Sequence		L	E	E	E	G	V	E	I	Y	Q	T	S	L	G	E	Y	K	L	N	L	P	E	Y	M	W	K
Template Known Secondary structure			G	G	G	T				B			S	S	S			B							B
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions