Job Description P37689 Confidence 43.90% Date Thu Jan 5 11:57:01 GMT 2012 Rank 44 Aligned Residues 107 % Identity 17% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		F	G	E	W	M	A	K	N	D	K	T	Q	L	R	I	S	E	.	T	E	K	Y	A	H	V	T	F	F	F	N	G	G	V	E	E	S	F	K	G	E	D	R	I	L	I	N	S	P	K	V	A	T	Y	D	L	Q	P	E	M	S	S	A	E	L	T	E	K	L	V	A	A	I	K	S	G	K	Y	D	T	I
Query Conservation																			.
Alig confidence																			.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	T	F	R	A	G	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	I	I
Template Known Secondary structure									T	T											S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.											T										S																T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.														.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	C	N	Y	P	N	G	D	M	V	G	H	T	G	V	M	E	A	A	V	K	A	V	E	A	L	D	H	C	V	E	E	V	A	K	A	V	E	S	V	G	G	Q	L	L	I	T	A	D	H	G	N	A
Query Conservation
Alig confidence			.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.																										.	.	.	.	.	.	.
Template Sequence		I	.	.	.	.	.	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	.	.	.	.	.	.	.	P	D	N	I	V	Y	V	M	D	A	S	I	G	Q	A
Template Known Secondary structure			.	.	.	.	.								T	T																	.	.	.	.	.	.	.		S								T	T			T	T
Template Predicted Secondary structure			.	.	.	.	.																										.	.	.	.	.	.	.
Template SS confidence
		188						.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.								.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions