Job Description P37689 Confidence 21.22% Date Thu Jan 5 11:57:01 GMT 2012 Rank 55 Aligned Residues 146 % Identity 15% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																																																								.							.
Query SS confidence																																																								.							.
Query Sequence		E	I	T	R	A	F	V	N	A	D	F	D	G	F	A	R	K	K	V	V	N	V	D	F	V	M	L	T	E	Y	A	A	D	I	K	T	A	V	A	Y	P	P	A	S	L	V	N	T	F	G	E	W	M	A	.	K	N	D	K	T	Q	.	L	R	I	S	E	T	E	K	Y	A	H	V	T	F	F	F	N	G
Query Conservation																																																								.							.
Alig confidence																																										.	.	.	.	.	.	.	.	.						.							.													.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Sequence		E	L	V	A	A	M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	.	.	.	.	.	.	.	.	.	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	.	.	.	.	.	.
Template Known Secondary structure							T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T					.	.	.	.	.	.	.	.	.						T	S	S	S					B						S	S	S		S		.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	E	E	S	F	K	G	E	D	R	I	L	I	N	S	P	K	V	A	T	Y	D	L	Q	P	E	M	S	S	A	E	L	T	E	K	L	V	A	A	I	K	S	G	K	Y	D	T	I	I	C	N	Y	P	N	G	D	M	V	G	H	T	G	V	M	E	A	A	V	K	A	V	E	A	L	D	H	C	V	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.																																												.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																																												.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	.	.	.	.	.	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N
Template Known Secondary structure		.	.	.	.	.	.	.										T	T							S	S				T	T													T	T		S				.	.	.	.	.								S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.																																												.	.	.	.	.
Template SS confidence
									146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.						.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	A	K	A	V	E	S	V	G	G	Q	L	L	I	T	A	D	H	G	N	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D
Template Known Secondary structure		.	.	.	.	.	.	.		S								T	T	T	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									214	.	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions