Job Description P37689 Confidence 47.28% Date Thu Jan 5 11:57:01 GMT 2012 Rank 40 Aligned Residues 148 % Identity 18% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		E	I	T	R	A	F	V	N	A	D	F	D	G	F	A	R	K	K	V	V	N	V	D	F	V	M	L	T	E	Y	A	A	D	I	K	T	A	V	A	Y	P	P	A	S	L	V	N	T	F	G	E	W	M	A	K	N	D	K	T	Q	L	R	I	S	E	.	T	E	K	Y	A	H	V	T	F	F	F	N	G	G
Query Conservation																																																																			.
Alig confidence																																										.	.	.	.	.	.	.	.	.																	.								.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template Sequence		E	L	S	K	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	.	.	.	.	.	.	.	.	.	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	.	.	.	.	.	.	.
Template Known Secondary structure							T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T					.	.	.	.	.	.	.	.	.						T	T	S					B						S	S	S		S		.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.										.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	E	S	F	K	G	E	D	R	I	L	I	N	S	P	K	V	A	T	Y	D	L	Q	P	E	M	S	S	A	E	L	T	E	K	L	V	A	A	I	K	S	G	K	Y	D	T	I	I	C	N	Y	P	N	G	D	M	V	G	H	T	G	V	M	E	A	A	V	K	A	V	E	A	L	D	H	C	V	E	E
Query Conservation
Alig confidence		.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	.	.	.	.	.	.	.	.	.	.	T	K	L	L	E	E	M	K	E
Template Known Secondary structure		.	.	.	.	.	.										T	T							S	S				T	T													T	T		S									S			S	S	T		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
								141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.											.	.	.	.	200	.	.	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	K	A	V	E	S	V	G	G	Q	L	L	I	T	A	D	H	G	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K
Template Known Secondary structure									S								T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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