Job Description P77228 Confidence 99.95% Date Thu Jan 5 12:26:35 GMT 2012 Rank 2 Aligned Residues 375 % Identity 13% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.																																																																	.	.
Query SS confidence															.																																																																	.	.
Query Sequence		F	Q	L	Y	S	L	G	A	A	L	V	F	H	.	E	I	F	F	P	E	S	S	T	A	M	A	L	I	L	A	M	G	T	Y	G	A	G	Y	V	A	R	I	V	G	A	F	I	F	G	K	M	G	D	R	I	G	R	K	K	V	L	F	I	T	I	T	M	M	G	I	C	T	T	L	I	G	V	L	.	.
Query Conservation															.																																																																	.	.
Alig confidence															.																	.	.	.	.	.																																												.	.
Template Conservation																																.	.	.	.	.
Template Sequence		F	F	L	W	A	V	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	.	.	.	.	.	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A	A	L	F	W	P	A	A	E
Template Known Secondary structure																					T	T			T	T						.	.	.	.	.								T	T											S																			T
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
			80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	T	Y	A	Q	I	G	V	F	A	P	I	L	L	V	T	L	R	I	I	Q	G	L	G	A	G	A	E	I	S	G	A	G	T	M	L	A	E	Y	A	P	K	G	K	R	G	I	I	S	S	F	V	A	M	G	T	N	C	G	T	L	S	A	T	A	I	W	A	F	M	F	F	I	L	S	K	E	E	L
Query Conservation		.
Alig confidence		.						.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.
Template Sequence		I	M	N	Y	T	L	.	.	.	.	.	.	.	.	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q	S
Template Known Secondary structure		T	T					.	.	.	.	.	.	.	.																										S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure								.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.									120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
																				159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	W	G	W	R	I	P	F	L	A	S	V	V	V	M	V	F	A	I	W	L	R	M	N	L	K	E	S	P	V	F	E	K	V	N	D	S	N	Q	P	T	A	K	P	A	P	A	G	S	M	F	Q	S	K	S	F	W	L	A	T	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R	W	A	V	L
Template Known Secondary structure								S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	F	G	Q	A	G	N	S	G	L	I	Q	T	F	L	A	G	Y	L	V	Q	T	L	L	F	N	K	A	I	P	T	D	A	L	M	I	S	S	I	L	G	F	M	T	I	P	F	L	G	W	L	S	D	K	I	G	R	R	I	P	Y	I	I	M	N	T	S	A	I	V	L	A	W	P	M	L	S	I	I
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		A	Q	F	C	Y	V	G	A	Q	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	.
Template Known Secondary structure																									S	T	T																															S																							.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	K	S	Y	A	P	S	T	I	M	V	A	L	I	V	I	H	N	C	A	V	L	G	L	F	A	L	E	N	I	T	M	A	E	M	F	G	C	K	N	R	F	T	R	M	A	I	S	K	E	I	G	G	L	I	A	S	G	F	G	P	I	L	A	G	I	F	C	T	M	T	E	S	W	Y	P	I	A	I
Query Conservation
Alig confidence		.	.	.	.	.																																																.	.	.
Template Conservation		.	.	.	.	.																																																.	.	.
Template Sequence		.	.	.	.	.	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	S	S	F	I	V	M	T	I	.	.	.	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	T	A	E	L
Template Known Secondary structure		.	.	.	.	.	S																	T	T											S	S		G	G	G											G	G	.	.	.	G																	T	S	S	G	G	G	G
Template Predicted Secondary structure		.	.	.	.	.																																																.	.	.
Template SS confidence
							345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.				.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	M	A	Y	S	V	I	G	L	I	S	A	L	K	M	P	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure															T	S
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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