Job Description P77228 Confidence 2.06% Date Thu Jan 5 12:26:35 GMT 2012 Rank 93 Aligned Residues 407 % Identity 8% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.												.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	Y	S	L	G	A	A	L	V	F	H	E	I	F	F	P	E	S	S	T	A	M	A	L	I	L	A	M	G	T	Y	G	A	G	Y	V	A	R	I	V	G	A	F	I	F	G	K	M	G	D	R	I	G	R	.	.	.	.	.	.	.	.	.	.	.	K	K	V	L	F	I	T	I	T	M	M	G	I	C
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																								.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																								.
Template Sequence		T	G	M	G	F	V	D	T	I	M	A	G	G	.	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	.	V	G	L	L	M	A	L	V	P	V	V	A	Q	L	N	G	A	G	R	Q	H	K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I
Template Known Secondary structure															.		T	T	T	T	T	T																	.								G	G	G		T	T	S		S	S	S	S	S	S	S
Template Predicted Secondary structure															.																								.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	L	I	G	V	L	P	T	Y	A	Q	I	G	V	F	A	P	I	L	L	V	T	L	R	I	I	Q	G	L	G	A	G	A	E	I	S	G	A	G	T	M	L	A	E	Y	A	P	K	G	K	R	G	I	I	S	S	F	V	A	M	G	T	N	C	G	T	L	S	A	T	A	I	W	A	F	M	F	F	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L	T	K	P	A	M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G
Template Known Secondary structure												S	S		S	S	T	T																											T	T	T	T		T	T	S																									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	E	E	L	L	A	W	G	W	R	I	P	F	L	A	S	V	V	V	M	V	F	A	I	W	L	R	M	N	L	K	E	S	P	V	F	E	K	V	N	D	S	N	Q	P	T	A	K	P	A	P	A	G	S	M	F	Q	S	K	S	F	W	L	A	T	G	L	R	F	G	Q	A	G	N	S	G	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	F	Y	I	V	T	S	K	R	L	A	H	V	K	V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L	F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A
Template Known Secondary structure																															T		T	T												S	S	T	T	T	S	T	T	T	T																									T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.														.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	F	L	A	G	Y	L	V	Q	T	L	L	F	N	K	A	I	P	T	D	A	L	M	I	S	S	I	L	G	F	M	T	I	P	F	L	G	W	L	S	D	K	I	G	R	R	I	P	Y	I	I	M	N	T	S	A	I	V	L	A	W	P	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K	L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y
Template Known Secondary structure			S		S	T					T	T																											G	G	G	S	S				T	T	T	T																														T	S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	D	K	S	Y	A	P	S	T	I	M	V	A	L	I	V	I	H	N	C	A	V	L	G	L	F	A	L	E	N	I	T	M	A	E	M	F	G	C	K	N	R	F	T	R	M	A	I	S	K	E	I	G	G	L	I	A	S	G	F	G	P	I	L	A	G	I	F	C	T	M	T	E	S	W	Y	P	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K	D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L
Template Known Secondary structure		S		S	S	T	T																													G	G	G	S	S																												S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		I	M	I	M	A	Y	S	V	I	G	L	I	S	A	L	K	M	P	.	E	V	K	D	R	D	L	S	A	L	E	D	A	A	E
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S	D	D	V	Q	L	H	L	A	A	K
Template Known Secondary structure														T	G	G	G	S	T	T	T			S	S		T	T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.