Job Description P77228 Confidence 99.91% Date Thu Jan 5 12:26:35 GMT 2012 Rank 4 Aligned Residues 356 % Identity 15% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	F	Q	L	Y	S	L	G	A	A	L	V	F	H	E	I	F	F	P	E	S	S	T	A	M	A	L	I	L	A	M	G	T	Y	G	A	G	Y	V	A	R	I	V	G	A	F	I	F	G	K	M	G	D	R	I	G	R	K	K	V	L	F	I	T	I	T	M	M	G	I	C	T	T	L	I	G	V	L	P
Query Conservation
Alig confidence																		.	.														.	.	.	.	.
Template Conservation																		.	.														.	.	.	.	.
Template Sequence		M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	.	.	L	N	V	R	E	G	A	V	Q	S	V	M	G	.	.	.	.	.	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L	V	A	V	T	T	S
Template Known Secondary structure																T	T	.	.	S	S	S	T	T									.	.	.	.	.											T	T						T	T	S
Template Predicted Secondary structure																		.	.														.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	A	Q	I	G	V	F	A	P	I	L	L	V	T	L	R	I	I	Q	G	L	G	A	G	A	E	I	S	G	A	G	T	M	L	A	E	Y	A	P	K	G	K	R	G	I	I	S	S	F	V	A	M	G	T	N	C	G	T	L	S	A	T	A	I	W	A	F	M	F	F	I	L	S	K	E	E	L	L	A
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.
Template Sequence		S	L	T	V	.	.	.	.	.	.	.	.	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y	L
Template Known Secondary structure						.	.	.	.	.	.	.	.																													T	S	S			S																							S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.									.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		W	G	W	R	I	P	F	L	A	S	V	V	V	M	V	F	A	I	W	L	R	M	N	L	K	E	S	P	V	F	E	K	V	N	D	S	N	Q	P	T	A	K	P	A	P	A	G	S	M	F	Q	S	K	S	F	W	L	A	T	G	L	R	F	G	Q	A	G	N	S	G	L	I	Q	T	F	L	A	G	Y	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																S	S				S	T	T	T						T	T	T		S	T																														S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	T	L	L	F	N	K	A	I	P	T	D	A	L	M	I	S	S	I	L	G	F	M	T	I	P	F	L	G	W	L	S	D	K	I	G	R	R	I	P	Y	I	I	M	N	T	S	A	I	V	L	A	W	P	M	L	S	I	I	V	D	K	S	Y	A	P	S	T	I	M	V	A	L	I	V	I	H	N	C
Query Conservation
Alig confidence																																																								.	.	.
Template Conservation																																																								.	.	.
Template Sequence		G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	.	.	.	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F
Template Known Secondary structure																		T														T	T	T	T																T	S	S	S	S	.	.	.	S
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	L	G	L	F	A	L	E	N	I	T	M	A	E	M	F	G	C	K	N	R	F	T	R	M	A	I	S	K	E	I	G	G	L	I	A	S	G	F	G	P	I	L	A	G	I	F	C	T	M	T	E	S	W	Y	P	I	A	I	M	I	M	A	Y	S	V	I
Query Conservation
Alig confidence																				.																.
Template Conservation																				.																.
Template Sequence		G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	.	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	.	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V
Template Known Secondary structure						T	S	S	T	T						T				.																.							S	T	T		T
Template Predicted Secondary structure																				.																.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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