 |
Job Description | P0ABB0 | Confidence | 89.37% | Date | Thu Jan 5 11:15:04 GMT 2012 |
Rank | 237 | Aligned Residues | 74 |
% Identity | 18% | Template | c3l9oA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:atp-dependent rna helicase dob1; |
PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
|
Resolution | 3.39 Å |
|
 |
  |   |
121 | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | D | H | D | G | F | S | A | V | E | A | I | A | P | G | V | I | E | R | Q | S | V | D | Q | P | V | Q | T | G | Y | K | A | V | D | S | M | I | P | I | G | R | G | Q | R | E | L | I | I | G | D | R | Q | T | G | K | T | A | L | A | I | D | A | I | I | N | Q | R | D | S | G | I | K | C | I | Y | V | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|   |
|
|
|
|
|
|
|   |
|   |
|
|
|
|
|
|
|   |   |
|   |
|   |   |
|   |
|
|
|   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |
|
|   |   |   |   | . | . | . |   |   |   |   |
|   |
|   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |
Template Sequence |   |
P | P | N | Y | D | Y | T | P | I | A | E | H | K | R | V | N | E | A | R | T | Y | P | F | T | L | D | P | F | Q | D | T | A | I | S | C | I | D | . |
. |
. |
R | G | E | S | V | L | V | S | A | H | T | S | A | G | K | T | V | V | A | E | Y | A | I | A | Q | S | L | K | N | K | Q | R | V | I | Y | T | S |
Template Known Secondary structure |   |
S | S |
|
|
| S | S | T | T | T | T | T |
|
|
| S |
| S | S |
|
| S | S |
|
|
|  |  |  |  |  |  |  |  |  |  | T | . | . | . | T | T |
|
|  |  |  |  |
|
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
126 | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | |
|
|
. | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|