Job Description P0ABB0 Confidence 100.00% Date Thu Jan 5 11:15:04 GMT 2012 Rank 23 Aligned Residues 337 % Identity 18% Template c3l0oB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima Resolution 2.35 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		A	L	N	L	E	R	D	S	V	G	A	V	V	M	G	P	Y	A	D	L	A	E	G	M	K	V	K	C	T	G	.	.	.	R	I	L	E	V	P	V	G	R	G	L	L	G	R	V	V	N	T	L	G	A	P	I	D	G	K	G	P	L	D	H	D	G	F	S	A	V	E	A	I	A	P	G	V	I	E	R
Query Conservation																																.	.	.
Alig confidence																																.	.	.																																											.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		V	L	E	I	H	P	E	G	F	G	F	L	R	R	I	E	D	N	L	L	P	S	N	D	D	I	Y	I	S	P	S	Q	I	R	K	F	N	L	N	T	G	D	I	I	S	G	V	I	A	M	I	K	I	E	A	I	N	Y	R	P	R	V	N	F	D	N	L	T	P	D	Y	P	R	E	R	.	.	.	.	F
Template Known Secondary structure							S	S	S							G	G	G	T	T				T	T						S	S	S	S	S	S	S				T	T										S			S			S	S						T	T	T	S							S	B	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		Q	S	V	D	Q	P	V	Q	T	G	Y	K	A	V	D	S	M	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q	T	G	K	T	A	L	A	I	D	A	.	.	I	I	N	Q	R	D	S	G	I	K	C	I	Y	V	A	I	G	Q	K	A	S	T	I	S	N	V	V	R	K	L	E	E	H	G	A
Query Conservation																																													.	.
Alig confidence																																													.	.																															.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		I	L	E	T	D	P	K	I	Y	S	T	R	L	I	D	L	F	A	P	I	G	K	G	Q	R	G	M	I	V	A	P	P	K	A	G	K	T	T	I	L	K	E	I	A	N	G	I	A	E	N	H	P	D	T	I	R	I	I	L	L	I	D	E	R	P	E	E	V	T	D	I	R	E	S	T	.	.	.	.	.
Template Known Secondary structure						S	T	T											S			B	T	T									T	T	S	S																	T	T	S																			T	T	S	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	N	T	I	V	V	V	A	T	A	S	E	S	A	A	L	Q	Y	L	A	P	Y	A	G	C	A	M	G	E	Y	F	R	D	R	G	E	D	A	L	I	I	Y	D	D	L	S	K	Q	A	V	A	Y	R	Q	I	S	L	L	L	R	R	P	P	G	R	E	A	F	P	G	D	V	F	Y	L	H	S	R	L
Query Conservation
Alig confidence		.	.																																																																.
Template Conservation		.	.																																																																.
Template Sequence		.	.	N	A	I	V	I	A	A	P	F	D	M	P	P	D	K	Q	V	K	V	A	E	L	T	L	E	M	A	K	R	L	V	E	F	N	Y	D	V	V	I	L	L	D	S	L	T	R	L	A	R	V	Y	N	I	V	V	P	P	S	G	K	L	L	T	.	G	G	V	D	P	A	A	L	Y	K	P	K	R	F
Template Known Secondary structure		.	.		S							T	T	S																						T	T																					S		S		S	S			S	.	S	S			T	T	T	T	S	T
Template Predicted Secondary structure		.	.																																																																.
Template SS confidence
				228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		L	E	R	A	A	R	V	N	A	E	Y	V	E	A	F	T	K	G	E	V	K	G	K	T	G	S	L	T	A	L	P	I	I	E	T	Q	.	A	G	D	V	S	A	F	V	P	T	N	V	I	S	I	T	D	G	Q	I	F	L	E	T	N	L	F	N	A	G	I	R	P	A	V	N	P	G	I	S	V	S	R
Query Conservation																																						.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	A	A	R	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	G	G	S	L	T	I	I	A	T	A	L	V	E	T	G	S	K	M	D	E	V	I	F	E	E	F	K	G	T	G	N	M	E	L	V	L	S	R	Q	L	A	N	K	R	I	F	P	A	I	N	L	L	L	S	G	T	R
Template Known Secondary structure			T	T		B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S												S	S	S		T	T	T	B	T	T					T	T			S					B						T	T	T		S	S		B		G	G	G				T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		305	.	.	.	.	310	.															.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	G	A	A	Q	T	K	I	M	K	K	L	S	G	G	I	R	T	A	L	A	Q	Y	R	E	L	A	A	F	S	Q	F	A	S	D	L	D	D	A	T	R	K	Q	L	D	H	G	Q	K	V	T	E	L	L	K	Q
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.
Template Sequence		R	E	E	L	L	L	D	E	E	T	L	K	K	V	W	L	L	R	R	M	L	S	A	M	T	E	E	E	G	L	T	L	I	L	.	.	.	.	.	.	.	.	N	K	L	S	E	T	S	S	N	E	E	F	L	K	L
Template Known Secondary structure		T	G	G	G	T	S														T	T	T	T	S		T	T								.	.	.	.	.	.	.	.					T		S	S							T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.									.	.	.	.	.	410	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions