Job Description P0ABB0 Confidence 100.00% Date Thu Jan 5 11:15:04 GMT 2012 Rank 8 Aligned Residues 428 % Identity 23% Template c3a5dM_ PDB info PDB header:hydrolase Chain: M: PDB Molecule:v-type atp synthase beta chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase Resolution 4.80 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																																		.	.	.	.																												.
Query SS confidence																																		.	.	.	.																												.
Query Sequence		N	E	G	T	I	V	S	V	S	D	G	V	I	R	I	H	G	L	A	D	C	M	Q	G	E	M	I	S	L	P	G	N	.	.	.	.	R	Y	A	I	A	L	N	L	E	R	D	S	V	G	A	V	V	M	G	P	Y	A	D	L	A	E	G	.	M	K	V	K	C	T	G	R	I	L	E	V	P	V	G	R
Query Conservation																																		.	.	.	.																												.
Alig confidence																																		.	.	.	.																												.
Template Conservation
Template Sequence		E	Y	T	G	I	T	Y	I	S	G	P	L	L	F	V	E	N	A	K	D	L	A	Y	G	A	I	V	D	I	K	D	G	T	G	R	V	R	G	G	Q	V	I	E	V	S	E	E	Y	A	V	I	Q	V	F	E	E	T	T	G	L	D	L	A	T	T	S	V	S	L	V	E	D	V	A	R	L	G	V	S	K
Template Known Secondary structure											T	T							S	S					T	T						S	S		S	S												T	T							S	S			T	T			T	T							S	S								G
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	L	G	R	V	V	N	T	L	G	A	P	I	D	G	K	G	P	L	D	H	D	G	F	S	A	V	E	A	I	A	P	G	V	I	E	R	Q	S	V	D	Q	P	V	Q	T	G	Y	K	A	V	D	S	M	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q	T	G	K	T	A	L	A	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	M	L	G	R	R	F	N	G	I	G	K	P	I	D	G	L	P	P	I	T	P	E	K	R	L	P	I	T	G	L	P	L	N	P	V	A	R	R	K	P	E	Q	F	I	Q	T	G	I	S	T	I	D	V	M	N	T	L	V	R	G	Q	K	L	P	I	F	S	G	S	G	L	P	A	N	E	I	A	A	Q
Template Known Secondary structure		G	G	T	T					T	T	S		B	S	S	S							S					S	S	S		S	S			B		S					S	B		B		S						T	T	S			B	T	T		B							T	T	S
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		182	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.																																																																	.
Query SS confidence							.	.	.	.																																																																	.
Query Sequence		A	I	I	N	Q	.	.	.	.	R	D	S	G	I	K	C	I	Y	V	A	I	G	Q	K	A	S	T	I	S	N	V	V	R	K	L	E	E	H	G	A	L	A	N	T	I	V	V	V	A	T	A	S	E	S	A	A	L	Q	Y	L	A	P	Y	A	G	C	A	M	G	E	Y	F	R	.	D	R	G	E	D	A
Query Conservation							.	.	.	.																																																																	.
Alig confidence							.	.	.	.																																																																	.
Template Conservation
Template Sequence		I	A	R	Q	A	T	V	R	P	K	E	E	P	F	A	V	V	F	A	A	M	G	I	T	Q	R	E	L	S	Y	F	I	Q	E	F	E	R	T	G	A	L	S	R	S	V	L	F	L	N	K	A	D	D	P	T	I	E	R	I	L	T	P	R	M	A	L	T	V	A	E	Y	L	A	F	E	H	D	Y	H	V
Template Known Secondary structure							B						S																											S	G	G	G	G								T	T	S																							S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	I	Y	D	D	L	S	K	Q	A	V	A	Y	R	Q	I	S	L	L	L	R	R	P	P	G	R	E	A	F	P	G	D	V	F	Y	L	H	S	R	L	L	E	R	A	A	R	V	N	A	E	Y	V	E	A	F	T	K	G	E	V	K	G	K	T	G	S	L	T	A	L	P	I	I	E	T	Q	A	G	D
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	I	L	T	D	M	T	N	Y	C	E	A	L	R	E	I	G	A	A	R	E	E	I	P	G	R	R	G	Y	P	G	Y	M	Y	T	D	L	A	T	I	Y	E	R	A	G	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	K	K	G	S	V	T	Q	I	P	I	L	S	M	P	D	D	D
Template Known Secondary structure							T															T	T					G	G	G			T	T										T	S				B	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S												G	G	G
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.														.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.						.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		V	S	A	F	V	P	T	N	V	I	S	I	T	D	G	Q	I	F	L	E	T	N	L	F	N	A	G	I	R	P	A	V	N	P	G	I	S	V	S	R	.	.	.	.	.	V	G	G	A	A	Q	T	K	I	M	K	K	L	S	G	G	I	R	T	A	L	A	Q	Y	R	E	L	A	A	F	S	Q	F	A	S
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.
Template Conservation
Template Sequence		R	T	H	P	I	P	D	L	T	G	Y	I	T	E	G	Q	I	Q	L	S	R	E	L	H	R	K	G	I	Y	P	P	I	D	P	L	P	S	L	S	R	L	M	N	N	G	V	G	K	G	K	T	R	E	D	H	K	Q	V	S	D	Q	L	Y	S	A	Y	A	N	G	V	D	I	R	K	L	V	A	I	I	G
Template Known Secondary structure		T	T	S							G	G	G		S					B							T	T		S	S		B		T	T	T				S	S	G	G	G	G		S	T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
				412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.					.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																													.	.	.	.
Query SS confidence		.	.																																													.	.	.	.
Query Sequence		.	.	D	L	D	D	A	T	R	K	Q	L	D	H	G	Q	K	V	T	E	L	L	K	Q	K	Q	Y	A	P	M	S	V	A	Q	Q	S	L	V	L	F	A	A	E	R	G	Y	.	.	.	.	L	A	D	V	E	L	S	K	I	G	S	F
Query Conservation		.	.																																													.	.	.	.
Alig confidence		.	.																																													.	.	.	.
Template Conservation
Template Sequence		E	D	A	L	T	E	N	D	R	R	Y	L	Q	F	A	D	A	F	E	R	F	F	I	N	Q	G	Q	Q	N	R	S	I	E	E	S	L	Q	I	A	W	A	L	L	S	M	L	P	Q	G	E	L	K	R	I	S	K	D	H	I	G	K	Y
Template Known Secondary structure		G	G	G	S																		T	T			S	S																	T	T	S		G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.