Job Description P0ABB0 Confidence 100.00% Date Thu Jan 5 11:15:04 GMT 2012 Rank 7 Aligned Residues 470 % Identity 21% Template c3a5dB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:v-type atp synthase alpha chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase Resolution 4.80 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		E	G	T	I	V	S	V	S	D	G	V	I	R	I	H	G	L	A	D	C	M	Q	G	E	M	I	S	L	.	P	G	N	R	Y	A	I	A	L	N	L	E	R	D	S	V	G	A	V	V	M	G	P	Y	A	D	L	A	E	G	M	K	V	K	C	T	G	R	I	L	E	V	P	V	G	R	G	L	L	G	R
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		Q	G	V	I	Q	K	I	A	G	P	A	V	I	A	K	G	M	L	G	A	R	M	Y	D	I	C	K	V	G	E	E	G	L	V	G	E	I	I	R	L	D	G	D	T	A	F	V	Q	V	Y	E	D	T	S	G	L	K	V	G	E	P	V	V	S	T	G	L	P	L	A	V	E	L	G	P	G	M	L	N	G
Template Known Secondary structure		S									T	T								T	T			T	T						T	T	S										S	S							S	S		G	G	G			T	T							S	S	S	S					S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		107	.	.	110	.	.	.	.	.	.																																																																					.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	N	T	L	G	A	P	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Y	D	G	I	Q	R	P	L	V	H	A	L	D	R	E	K	K	W	A	W	T	P	M	V	K	P	G	D	E	V	R	G	G	M	V	L	G	T	V	P	E	F	G	F	T	H	K	I	L	V	P	P	D	V	R	G	R	V	K	E	V	K	P	A	G	E	Y	T	V	E	E	P	V	V	V	L	E	D	G
Template Known Secondary structure					T	T	S						S	S		S	S											T	T					T	T								S	S	S	S								T	T											S					T	T	S						T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	L	D	H	D	G	F	S	A	V	E	A	I	A	P	G	V	I	E	R	Q	S	V	D	Q	P	V	Q	T	G	Y	K	A	V	D	S	M	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q	T	G	K	T	A	L	A	I	D	A	I	I	N	Q	R	D	S	G	I	K	C	I	Y	V	A	I
Query Conservation
Alig confidence																		.																																															.	.
Template Conservation																		.																																															.	.
Template Sequence		T	E	L	K	M	Y	H	T	W	P	V	R	R	A	R	P	.	V	Q	R	K	L	D	P	N	T	P	F	L	T	G	M	R	I	L	D	V	L	F	P	V	A	M	G	G	T	A	A	I	P	G	P	F	G	S	G	K	T	V	T	Q	Q	S	.	.	L	A	K	W	S	N	A	D	V	V	V	Y	V	G	C
Template Known Secondary structure						S						T	T	S				.		S					S		S	B				S								S			B	T	T								S	T	T	S	S								.	.					S	S		S
Template Predicted Secondary structure																		.																																															.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.								.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																		.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.
Query Sequence		G	Q	K	A	S	T	I	S	N	V	V	R	K	L	E	E	.	.	.	.	.	.	.	H	G	A	L	A	N	T	I	V	V	V	A	T	A	S	E	S	A	A	L	Q	Y	L	A	P	Y	A	G	C	A	M	G	E	Y	F	R	D	R	G	E	D	A	L	I	I	Y	D	D	L	S	K	Q	A	V	A	Y	R
Query Conservation																		.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	R	G	N	E	M	T	D	V	L	V	E	F	P	E	L	T	D	P	K	T	G	G	P	L	M	H	R	T	V	L	I	A	N	T	S	N	M	P	V	A	A	R	E	A	S	I	Y	V	G	V	T	I	A	E	Y	F	R	D	Q	G	F	S	V	A	L	M	A	D	S	T	S	R	W	A	E	A	L	R
Template Known Secondary structure		S			T	T	T	T					T	T	G	G	G				T	T	T	T			G	G	G	G								T	T	S																						T	T								S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	S	L	L	L	R	R	P	P	G	R	E	A	F	P	G	D	V	F	Y	L	H	S	R	L	L	E	R	A	A	R	V	N	A	E	Y	V	E	A	F	T	K	G	E	V	K	G	K	T	G	S	L	T	A	L	P	I	I	E	T	Q	A	G	D	V	S	A	F	V	P	T	N	V	I	S	I	T	D	G
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	S	S	R	L	E	E	M	P	A	E	E	G	Y	P	P	Y	L	A	A	R	L	A	A	F	Y	E	R	A	G	K	V	I	.	.	.	.	.	.	.	.	.	.	T	L	G	G	E	E	G	A	V	T	I	V	G	A	V	S	P	P	G	G	D	M	S	E	P	V	T	Q	S	T	L	R	I	V	G	A
Template Known Secondary structure							T	T					G	G	G			T	T											T						.	.	.	.	.	.	.	.	.	.		T	T	S														S	S	S				T	T										S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.											370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.								.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.			.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.																														.	.
Query SS confidence																																	.	.	.	.	.	.	.																														.	.
Query Sequence		Q	I	F	L	E	T	N	L	F	N	A	G	I	R	P	A	V	N	P	G	I	S	V	S	R	V	G	G	A	A	Q	.	.	.	.	.	.	.	T	K	I	M	K	K	L	S	G	G	I	R	T	A	L	A	Q	Y	R	E	L	A	A	F	S	Q	F	A	S	.	.	D	L	D	D	A	T	R	K	Q	L	D
Query Conservation																																	.	.	.	.	.	.	.																														.	.
Alig confidence																																	.	.	.	.	.	.	.																														.	.
Template Conservation
Template Sequence		F	W	R	L	D	A	S	L	A	F	R	R	H	F	P	A	I	N	W	N	G	S	Y	S	L	F	T	S	A	L	D	P	W	Y	R	E	N	V	A	E	D	Y	P	E	L	R	D	A	I	S	E	L	L	Q	R	E	A	G	L	Q	E	I	V	Q	L	V	G	P	D	A	L	Q	D	A	E	R	L	V	I	E
Template Known Secondary structure					B							T	T		S	S		B		T	T	T				T	T												T		T	T																											S	T	T
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		423	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		H	G	Q	K	V	T	E	.	L	L	K	Q	K	Q	Y	A	P	M	S	V	A	Q	Q	S	L	V	L	F	A	A	E	R	G	Y	L	A	D	V	E	L	S	K	I	G	S	F	E	A	A	L	L	A	Y	V	D	R	D	H	A	P	L	M	Q	E	I	N	Q	T	G	G	Y	N	D	E	I	E	G	K	L	K
Query Conservation									.
Alig confidence									.																													.
Template Conservation																																						.
Template Sequence		V	G	R	I	I	R	E	D	F	L	Q	Q	N	A	Y	H	E	V	D	A	Y	C	S	M	K	K	A	Y	G	I	M	K	M	I	L	A	.	F	Y	K	E	A	E	A	A	I	K	R	G	V	S	I	D	E	I	L	Q	L	P	V	L	E	R	I	G	R	A	R	Y	V	S	E	E	E	F	P	A	Y	F	E
Template Known Secondary structure										T	T				T	T	S	T	T	T	T	S																.											T	T								T								T	T	G	G	G			S	T
Template Predicted Secondary structure																																						.
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
		502	.	.	.	.	.	.	.	510	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	L	D	S	F	K	A	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	M	K	E	I	Q	G	A	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		565	.	.	.	.	570	.	.	.	.