Job Description P0ABB0 Confidence 100.00% Date Thu Jan 5 11:15:04 GMT 2012 Rank 2 Aligned Residues 484 % Identity 56% Template c2r9vA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution Resolution 2.10 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		A	Q	F	N	V	V	S	E	A	H	N	E	G	T	I	V	S	V	S	D	G	V	I	R	I	H	G	L	A	D	C	M	Q	G	E	M	I	S	L	.	P	G	N	R	Y	A	I	A	L	N	L	E	R	D	S	V	G	A	V	V	M	G	P	Y	A	D	L	A	E	G	M	K	V	K	C	T	G	R	I	L
Query Conservation																																									.
Alig confidence																																									.
Template Conservation
Template Sequence		K	S	F	E	E	K	I	D	L	E	D	T	G	K	V	I	Q	V	G	D	G	I	A	R	A	Y	G	L	N	K	V	X	V	S	E	L	V	E	F	V	E	T	G	V	K	G	V	A	F	N	L	E	E	D	N	V	G	I	I	I	L	G	E	Y	K	D	I	K	E	G	H	T	V	R	R	L	K	R	I	I
Template Known Secondary structure			T	T				S		T	T	T									T	T								T	T			T	T						T	T	T											T	T								S			T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	P	V	G	R	G	L	L	G	R	V	V	N	T	L	G	A	P	I	D	G	K	G	P	L	D	H	D	G	F	S	A	V	E	A	I	A	P	G	V	I	E	R	Q	S	V	D	Q	P	V	Q	T	G	Y	K	A	V	D	S	M	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q	T	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	P	V	G	E	E	L	L	G	R	V	V	N	P	L	G	E	P	L	D	G	K	G	P	I	N	A	K	N	F	R	P	I	E	I	K	A	P	G	V	I	Y	R	K	P	V	D	T	P	L	Q	T	G	I	K	A	I	D	S	X	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q	T	G	K
Template Known Secondary structure						S	G	G	G	T	T					T	T	S		B		S	S	S						S					S							G	G	G	B					S					S								S				T	T		B							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	A	I	D	A	I	I	N	Q	R	D	S	G	I	K	C	I	Y	V	A	I	G	Q	K	A	S	T	I	S	N	V	V	R	K	L	E	E	H	G	A	L	A	N	T	I	V	V	V	A	T	A	S	E	S	A	A	L	Q	Y	L	A	P	Y	A	G	C	A	M	G	E	Y	F	R	D	R	G	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	I	A	I	D	T	I	I	N	Q	K	G	Q	G	V	Y	C	I	Y	V	A	I	G	Q	K	K	S	A	I	A	R	I	I	D	K	L	R	Q	Y	G	A	X	E	Y	T	T	V	V	V	A	S	A	S	D	P	A	S	L	Q	Y	I	A	P	Y	A	G	C	A	X	G	E	Y	F	A	Y	S	G	R	D
Template Known Secondary structure											T	T	T	T	T	T									S																T	T	G	G	G	G								T	T	S																					T	T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	I	I	Y	D	D	L	S	K	Q	A	V	A	Y	R	Q	I	S	L	L	L	R	R	P	P	G	R	E	A	F	P	G	D	V	F	Y	L	H	S	R	L	L	E	R	A	A	R	V	N	A	E	Y	V	E	A	F	T	K	G	E	V	K	G	K	T	G	S	L	T	A	L	P	I	I	E	T	Q	A	G
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	V	V	Y	D	D	L	S	K	H	A	V	A	Y	R	Q	L	S	L	L	X	R	R	P	P	G	R	E	A	Y	P	G	D	I	F	Y	L	H	S	R	L	L	E	R	A	V	R	L	N	D	K	L	.	.	.	.	.	.	.	.	.	.	.	G	G	G	S	L	T	A	L	P	I	V	E	T	Q	A	N
Template Known Secondary structure								T														T	S				T	T																	T	T				B		T	T	T	.	.	.	.	.	.	.	.	.	.	.	T	S												S	T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.												310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	S	A	F	V	P	T	N	V	I	S	I	T	D	G	Q	I	F	L	E	T	N	L	F	N	A	G	I	R	P	A	V	N	P	G	I	S	V	S	R	V	G	G	A	A	Q	T	K	I	M	K	K	L	S	G	G	I	R	T	A	L	A	Q	Y	R	E	L	A	A	F	S	Q	F	A	S	D	L	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	S	A	Y	I	P	T	N	V	I	S	I	T	D	G	Q	I	Y	L	E	P	G	L	F	Y	A	G	Q	R	P	A	I	N	V	G	L	S	V	S	R	V	G	G	S	A	Q	I	K	A	X	K	Q	V	A	G	X	L	R	I	D	L	A	Q	Y	R	E	L	E	T	F	A	Q	F	A	T	E	L	D	P
Template Known Secondary structure			T	T	S									T	S	S					B								T		S	S		B		T	T	T				G	G	G	T	T	T	S																							T	T	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	R	K	Q	L	D	H	G	Q	K	V	T	E	L	L	K	Q	K	Q	Y	A	P	M	S	V	A	Q	Q	S	L	V	L	F	A	A	E	R	G	Y	L	A	D	V	E	L	S	K	I	G	S	F	E	A	A	L	L	A	Y	V	D	R	D	H	A	P	L	M	Q	E	I	N	Q	T	G	G	Y	N	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	R	A	Q	I	I	R	G	Q	R	L	X	E	L	L	K	Q	E	Q	Y	S	P	X	P	V	E	E	Q	V	V	V	L	F	A	G	V	R	G	Y	L	D	D	L	P	V	E	E	V	R	R	F	E	K	E	F	L	R	F	X	H	E	K	H	Q	D	I	L	D	D	I	K	T	K	K	E	L	T	S	E
Template Known Secondary structure																	T				T	T																	T	T	T	T	T	T	S		G	G	G																											S	S
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	G	K	L	K	G	I	L	D	S	F	K	A	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	E	K	L	K	K	A	I	E	E	F	K	T	T	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.