Job Description P0ABB0 Confidence 100.00% Date Thu Jan 5 11:15:04 GMT 2012 Rank 14 Aligned Residues 414 % Identity 24% Template c2c61A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:a-type atp synthase non-catalytic subunit b; PDBTitle: crystal structure of the non-catalytic b subunit of a-type2 atpase from m. mazei go1 Resolution 1.5 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		D	G	V	I	R	I	H	G	L	A	D	C	M	Q	G	E	M	I	S	L	P	G	N	.	.	.	.	R	Y	A	I	A	L	N	L	E	R	D	S	V	G	A	V	V	M	G	P	Y	A	D	L	A	E	G	M	K	V	K	C	T	G	R	I	L	E	V	P	V	G	R	G	L	L	G	R	V	V	N	T	L
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	L	I	F	V	E	K	T	E	P	V	G	Y	N	E	I	V	N	I	K	M	G	D	G	T	V	R	R	G	Q	V	L	D	S	S	A	D	I	V	V	V	Q	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	G	E	T	L	K	L	P	A	S	V	D	L	L	G	R	I	L	S	G	S
Template Known Secondary structure											S				T	T								T	T	S												S	S								.	.	.	.	.	.	.	.	.	.	.	.	.					B							G	G	G	T	T					T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.														.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.					.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence		G	A	P	I	D	G	K	G	P	L	D	H	D	G	F	S	A	V	E	A	I	A	P	G	V	I	E	R	Q	S	V	D	Q	P	V	Q	T	G	Y	K	A	V	D	S	M	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q	T	G	K	T	A	L	A	I	D	A	I	.	.	.	.	I	N	Q	R
Query Conservation																																																																										.	.	.	.
Alig confidence																																																																										.	.	.	.
Template Conservation
Template Sequence		G	E	P	R	D	G	G	P	R	I	V	P	D	Q	L	L	D	I	N	G	A	A	M	N	P	Y	A	R	L	P	P	K	D	F	I	Q	T	G	I	S	T	I	D	G	T	N	T	L	V	R	G	Q	K	L	P	I	F	S	A	S	G	L	P	H	N	E	I	A	L	Q	I	A	R	Q	A	S	V	P	G	S
Template Known Secondary structure		S		B	S	S	S							S					S	S	S		S	S			B		S					S	B		B		S						T	T	S			B	T	T		B							T	T	S														B		T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		D	S	G	I	K	C	I	Y	V	A	I	G	Q	K	A	S	T	I	S	N	V	V	R	K	L	E	E	H	G	A	L	A	N	T	I	V	V	V	A	T	A	S	E	S	A	A	L	Q	Y	L	A	P	Y	A	G	C	A	M	G	E	Y	F	R	.	D	R	G	E	D	A	L	I	I	Y	D	D	L	S	K	Q
Query Conservation																																																																	.
Alig confidence																																																																	.
Template Conservation
Template Sequence		E	S	A	F	A	V	V	F	A	A	M	G	I	T	N	E	E	A	Q	Y	F	M	S	D	F	E	K	T	G	A	L	E	R	A	V	V	F	L	N	L	A	D	D	P	A	V	E	R	I	V	T	P	R	M	A	L	T	A	A	E	Y	L	A	Y	E	H	G	M	H	V	L	V	I	L	T	D	I	T	N	Y
Template Known Secondary structure		S	S																											S	G	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	A	Y	R	Q	I	S	L	L	L	R	R	P	P	G	R	E	A	F	P	G	D	V	F	Y	L	H	S	R	L	L	E	R	A	A	R	V	N	A	E	Y	V	E	A	F	T	K	G	E	V	K	G	K	T	G	S	L	T	A	L	P	I	I	E	T	Q	A	G	D	V	S	A	F	V	P	T	N	V	I
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	A	L	R	Q	M	G	A	A	R	N	E	V	P	G	R	R	G	Y	P	G	Y	M	Y	T	D	L	A	T	L	Y	E	R	A	G	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	A	K	G	S	V	T	Q	I	P	I	L	S	M	P	G	D	D	I	T	H	P	I	P	D	L	S	G
Template Known Secondary structure						T	T	S	G	G	G	T	T			T	T	S	T	T			T											T	S				B	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S													S		T	T	T	S						G	G
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290														.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.						.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.			.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.																																				.	.
Query SS confidence																																.	.	.	.	.																																				.	.
Query Sequence		S	I	T	D	G	Q	I	F	L	E	T	N	L	F	N	A	G	I	R	P	A	V	N	P	G	I	S	V	S	R	.	.	.	.	.	V	G	G	A	A	Q	T	K	I	M	K	K	L	S	G	G	I	R	T	A	L	A	Q	Y	R	E	L	A	A	F	S	Q	F	A	S	.	.	D	L	D	D	A	T	R	K
Query Conservation																																.	.	.	.	.																																				.	.
Alig confidence																																.	.	.	.	.																																				.	.
Template Conservation
Template Sequence		Y	I	T	E	G	Q	I	V	V	A	R	E	L	H	R	K	G	I	Y	P	P	I	N	V	L	P	S	L	S	R	L	M	N	S	G	I	G	A	G	K	T	R	E	D	H	K	A	V	S	D	Q	M	Y	A	G	Y	A	E	G	R	D	L	R	G	L	V	A	I	V	G	K	E	A	L	S	E	R	D	T	K
Template Known Secondary structure		G	G	T	T					B							T	T		S	S		B		T	T	T				T	T	G	G	G	S		S	T	T	T	S		T	T																											G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		Q	L	D	H	G	Q	K	V	T	E	.	L	L	K	Q	K	Q	Y	A	P	M	S	V	A	Q	Q	S	L	V	L	F	A	A	E	R	G	Y	L	A	D	V	E	L	S	K	I	G	S	F	E	A	A	L	L	A	Y	V	D	R	D	H
Query Conservation												.
Alig confidence												.																.	.	.	.
Template Conservation																												.	.	.	.
Template Sequence		F	L	E	F	A	D	L	F	E	D	K	F	V	R	Q	G	R	N	E	N	R	T	I	E	D	T	.	.	.	.	L	E	I	G	W	Q	I	L	T	H	L	P	E	N	Q	L	G	R	I	D	N	K	Y	I	Q	K	Y	H	P	A	H
Template Known Secondary structure													T	T				T	T									.	.	.	.									T	T	S		G	G	G		T	T	S									S	T	T
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.					.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.