Job Description P0ABB0 Confidence 100.00% Date Thu Jan 5 11:15:04 GMT 2012 Rank 16 Aligned Residues 453 % Identity 21% Template c1vdzA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:a-type atpase subunit a; PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3 Resolution 2.55 Å

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		24	.	.	.	.	.	30	.	.	.	.											.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.								70	.	.	.	.	.	.	.	.	.	80			.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.												.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.												.	.
Query Sequence		E	A	H	N	E	G	T	I	V	S	V	.	.	.	.	.	.	.	.	.	.	S	D	G	V	I	R	I	H	G	L	A	D	C	M	Q	G	E	M	I	S	L	P	G	N	R	Y	A	I	A	L	N	L	E	R	D	.	.	.	.	.	.	.	S	V	G	A	V	V	M	G	P	Y	A	.	.	D	L	A	E
Query Conservation													.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.												.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.							.	.																												.	.	.	.	.	.	.												.	.
Template Conservation																													.	.
Template Sequence		P	V	V	G	T	G	A	S	L	S	V	E	L	G	P	G	L	L	T	S	I	Y	D	G	I	Q	R	.	.	P	L	E	V	I	R	E	K	T	G	D	F	I	A	R	G	V	T	A	P	A	L	P	R	D	K	K	W	H	F	I	P	K	A	K	V	G	D	K	V	V	G	G	D	I	I	G	E	V	P	E
Template Known Secondary structure					S	S									S	T	T		T	T					T	T	S		.	.		S	S					B			S	S			B						S	S		S	S											T	T					T	T
Template Predicted Secondary structure																													.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		85	.	.	.	.	90									.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.								.
Query SS confidence								.	.	.	.	.	.	.	.								.
Query Sequence		G	M	K	V	K	C	.	.	.	.	.	.	.	.	T	G	R	I	L	E	V	.	P	V	G	R	G	L	L	G	R	V	V	N	T	L	G	A	P	I	D	G	K	G	P	L	D	H	D	G	F	S	A	V	E	A	I	A	P	G	V	I	E	R	Q	S	V	D	Q	P	V	Q	T	G	Y	K	A	V	D	S
Query Conservation								.	.	.	.	.	.	.	.								.
Alig confidence								.	.	.	.	.	.	.	.								.																																						.
Template Conservation																																																													.
Template Sequence		T	S	I	I	V	H	K	I	M	V	P	P	G	I	E	G	E	I	V	E	I	A	E	E	G	D	Y	T	I	E	E	V	I	A	K	V	K	T	P	S	G	E	I	K	E	L	K	M	Y	Q	R	W	P	V	R	V	K	R	P	.	Y	K	E	K	L	P	P	E	V	P	L	I	T	G	Q	R	V	I	D	T
Template Known Secondary structure		S	S	S									T	T											S					T	T	S								T	T	S							S						T	T	S				.		S					S		S	B				S
Template Predicted Secondary structure																																																													.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.								.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.
Query Sequence		M	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q	T	G	K	T	A	L	A	I	D	A	I	I	N	Q	R	D	S	G	I	K	C	I	Y	V	A	I	G	Q	K	A	S	T	I	S	N	V	V	R	K	L	E	E	.	.	.	.	.	.	.	H	G	A	L	A	N	T	I	V	V	V	A	T	A
Query Conservation																																																													.	.	.	.	.	.	.
Alig confidence																												.	.																																.	.	.	.	.	.	.
Template Conservation																												.	.
Template Sequence		F	F	P	Q	A	K	G	G	T	A	A	I	P	G	P	F	G	S	G	K	T	V	T	Q	H	Q	.	.	L	A	K	W	S	D	A	Q	V	V	I	Y	I	G	C	G	E	R	G	N	E	M	T	D	V	L	E	E	F	P	K	L	K	D	P	K	T	G	K	P	L	M	E	R	T	V	L	I	A	N	T	S
Template Known Secondary structure			S			B	T	T							S		T	T		T	T							.	.					S	S		S								S			T	T	T	T					S	S	G	G	G		B		T	T	T	S	S	B	G	G	G	G								T
Template Predicted Secondary structure																												.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	S	A	A	L	Q	Y	L	A	P	Y	A	G	C	A	M	G	E	Y	F	R	D	R	G	E	D	A	L	I	I	Y	D	D	L	S	K	Q	A	V	A	Y	R	Q	I	S	L	L	L	R	R	P	P	G	R	E	A	F	P	G	D	V	F	Y	L	H	S	R	L	L	E	R	A	A	R	V	N	A	E	Y
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		N	M	P	V	A	A	R	E	A	S	I	Y	T	G	I	T	I	A	E	Y	F	R	D	M	G	Y	D	V	A	L	M	A	D	S	T	S	R	W	A	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	A	Y	L	A	S	K	L	A	E	F	Y	E	R	A	G	R	V	V	.	.	.
Template Known Secondary structure		T	S																						T	T											S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T						.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.																	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		V	E	A	F	T	K	G	E	V	K	G	K	T	G	S	L	T	A	L	P	I	I	E	T	Q	A	G	D	V	S	A	F	V	P	T	N	V	I	S	I	T	D	G	Q	I	F	L	E	T	N	L	F	N	A	G	I	R	P	A	V	N	P	G	I	S	V	S	R	V	G	G	A	A	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																																																					.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	T	L	G	S	D	Y	R	V	G	S	V	S	V	I	G	A	V	S	P	P	G	G	D	F	S	E	P	V	V	Q	N	T	L	R	V	V	K	V	F	W	A	L	D	A	D	L	A	R	R	R	H	F	P	A	I	N	W	L	T	S	Y	S	L	Y	V	D	A	V	K	D	W	W	H	K	N
Template Known Secondary structure		.	.	.	.	.		S	S	S	S															S	S	S				T	T										S					B							T	T		S	S		B		T	T	T				T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.		430	.	.	.	.	.	.	.	.	.					440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																.	.																			.											.	.	.	.
Query SS confidence																																.	.																			.											.	.	.	.
Query Sequence		Q	T	K	I	M	K	K	L	S	G	G	I	R	T	A	L	A	Q	Y	R	E	L	A	A	F	S	Q	F	A	S	.	.	D	L	D	D	A	T	R	K	Q	L	D	H	G	Q	K	V	T	E	.	L	L	K	Q	K	Q	Y	A	P	M	.	.	.	.	S	V	A	Q	Q	S	L	V	L	F	A	A	E	R	G
Query Conservation																																.	.																			.											.	.	.	.
Alig confidence																																.	.																			.											.	.	.	.
Template Conservation
Template Sequence		I	D	P	E	W	K	A	M	R	D	K	A	M	A	L	L	Q	K	E	S	E	L	Q	E	I	V	R	I	V	G	P	D	A	L	P	E	R	E	R	A	I	L	L	V	A	R	M	L	R	E	D	Y	L	Q	Q	D	A	F	D	E	V	D	T	Y	C	P	P	E	K	Q	V	T	M	M	R	V	L	L	N	F
Template Known Secondary structure		T		T	T																											S	T	T																			T	T				T	T	S	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		455								.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.
Query Sequence		Y	.	.	.	.	.	.	.	L	A	D	V	E	L	S	K	I	G	S	F	E	A	A	L	L	A	Y	V	D	R	D	H	A	P	L	M	Q	E	I	N	Q	T	G	G	Y	N	D	E	I	E	G	K	L	K	G	I	L	D	S	F	K	A
Query Conservation			.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.													.																					.	.	.
Template Conservation																						.																					.	.	.
Template Sequence		Y	D	K	T	M	E	A	I	N	R	G	V	P	L	E	E	I	A	K	L	.	P	V	R	E	E	I	G	R	M	K	F	E	R	D	V	S	K	I	R	S	.	.	.	L	I	D	K	T	N	E	Q	F	E	E	L	F	K	K	Y	G	A
Template Known Secondary structure										T	T	T								T		.	T						T	T	G	G	G									T	.	.	.															S
Template Predicted Secondary structure																						.																					.	.	.
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550		.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570				.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.