Job Description P0ABB0 Confidence 100.00% Date Thu Jan 5 11:15:04 GMT 2012 Rank 13 Aligned Residues 430 % Identity 26% Template c1skyE_ PDB info PDB header:atp synthase Chain: E: PDB Molecule:f1-atpase; PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3 Resolution 3.20 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.												.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																							.	.												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	E	G	T	I	V	S	V	S	D	G	V	I	R	I	H	G	L	A	D	C	.	.	M	Q	G	E	M	I	S	L	P	G	N	.	.	.	.	.	.	.	.	.	.	.	R	Y	A	I	A	L	N	L	E	R	D	S	V	G	A	V	V	M	G	P	Y	A	D	L	A	E	G	M	K	V	K	C	T	G	R
Query Conservation																							.	.												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	G	R	V	I	Q	V	M	G	P	V	V	D	V	K	F	E	N	G	H	L	P	A	I	Y	N	A	L	K	I	Q	H	K	A	R	N	E	N	E	V	D	I	D	L	T	L	E	V	A	L	H	L	G	D	D	T	V	R	T	I	A	M	A	S	T	D	G	L	I	R	G	M	E	V	I	D	T	G	A
Template Known Secondary structure											T	T							S	T	T					T	T										S	S	T	T																T	T							S	S			T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		I	L	E	V	P	V	G	R	G	L	L	G	R	V	V	N	T	L	G	A	P	I	D	G	K	G	P	L	D	H	D	.	G	F	S	A	V	E	A	I	A	P	G	V	I	E	R	Q	S	V	D	Q	P	V	Q	T	G	Y	K	A	V	D	S	M	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		P	I	S	V	P	V	G	Q	V	T	L	G	R	V	F	N	V	L	G	E	P	I	D	L	E	G	D	I	P	A	D	A	R	R	D	P	I	H	R	P	A	P	K	F	E	E	L	A	T	E	V	E	I	L	E	T	G	I	K	V	V	D	L	L	A	P	Y	I	K	G	G	K	I	G	L	F	G	G	A	G
Template Known Secondary structure								S	G	G	G	T	T					T	T	S		B		S	S	S					T	T	S					S							G	G	G	B			S							S								S				T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		T	G	K	T	A	L	A	I	D	A	I	I	N	Q	R	D	.	S	G	I	K	C	I	Y	V	A	I	G	Q	K	A	S	T	I	S	N	V	V	R	K	L	E	E	H	G	A	L	A	N	T	I	V	V	V	A	T	A	S	E	S	A	A	L	Q	Y	L	A	P	Y	A	G	C	A	M	G	E	Y	F	R	D
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		V	G	K	T	V	L	I	Q	E	L	I	H	N	I	A	Q	E	H	G	G	I	S	V	F	A	G	V	G	E	R	T	R	E	G	N	D	L	Y	H	E	M	K	D	S	G	V	I	S	K	T	A	M	V	F	G	Q	M	N	E	P	P	G	A	R	M	R	V	A	L	T	G	L	T	M	A	E	Y	F	R	D
Template Known Secondary structure		S																	T										S	S															T	S	G	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
			252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	R	G	E	D	A	L	I	I	Y	D	D	L	S	K	Q	A	V	A	Y	R	Q	I	S	L	L	L	R	R	P	P	G	R	E	A	F	P	G	D	V	F	Y	L	H	S	R	L	L	E	R	A	A	R	V	N	A	E	Y	V	E	A	F	T	K	G	E	V	K	G	K	T	G	S	L	T	A	L	P	I	I
Query Conservation		.
Alig confidence		.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	G	Q	D	G	L	L	F	I	D	N	I	F	R	F	T	Q	A	G	S	E	V	S	A	L	L	G	R	M	P	S	A	I	G	Y	Q	P	T	L	A	T	E	M	G	Q	L	Q	E	R	I	T	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	G	S	I	T	S	I	Q	A	I
Template Known Secondary structure			S											T															T					G	G	G			T	T										T	T	S	S		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.																.	.	.	.	300	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		E	T	Q	A	G	D	V	S	A	F	V	P	T	N	V	I	S	I	T	D	G	Q	I	F	L	E	T	N	L	F	N	A	G	I	R	P	A	V	N	P	G	I	S	V	S	R	V	G	G	.	A	A	Q	T	K	I	M	K	K	L	S	G	G	I	R	T	A	L	A	Q	Y	R	E	L	A	A	F	S	Q	F
Query Conservation																																																			.
Alig confidence																																																			.
Template Conservation
Template Sequence		Y	V	P	A	D	D	Y	T	D	P	A	P	A	T	T	F	S	H	L	D	A	T	T	N	L	E	R	K	L	A	E	M	G	I	Y	P	A	V	D	P	L	V	S	T	S	R	A	L	A	P	E	I	V	G	E	E	H	Y	Q	V	A	R	K	V	Q	Q	T	L	E	R	Y	K	E	L	Q	D	I	I	A	I
Template Known Secondary structure				S	T	T		S	S	S								T	T		S					B		T	T					T		S	S		B		T	T	T			B	T	T
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.											.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460										.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.																												.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query SS confidence				.	.																												.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Query Sequence		A	S	.	.	D	L	D	D	A	T	R	K	Q	L	D	H	G	Q	K	V	T	E	L	L	K	Q	K	Q	Y	A	P	.	.	.	.	.	.	.	.	.	.	M	S	V	A	Q	Q	S	L	V	L	F	A	A	E	R	G	Y	L	A	D	V	E	.	.	.	.	.	.	.	.	.	L	S	K	I	G	S	F	E
Query Conservation				.	.																												.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Alig confidence				.	.																												.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	M	D	E	L	S	D	E	D	K	L	V	V	H	R	A	R	R	I	Q	F	F	L	S	Q	N	F	H	V	A	E	Q	F	T	G	Q	P	G	S	Y	V	P	V	K	E	T	V	R	G	F	K	E	I	L	E	G	K	Y	D	H	L	P	E	D	R	F	R	L	V	G	R	I	E	E	V	V	E	K	A
Template Known Secondary structure				S	T	T		T	T																T		B			T	T	T					S																				T	T	T	T	T	T	S		G	G	G	S	T	T	B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		469	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		467	.	.