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Job DescriptionP0ABB0
Confidence100.00%DateThu Jan 5 11:15:04 GMT 2012
Rank4Aligned Residues477
% Identity55%Templatec1kmhA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atpase alpha subunit; PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90.........100...
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Query Sequence  EAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGL
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Template Conservation       
 
  
   
  
 

     

 
       
 

      
         

  
  
  

    
 

  
Template Sequence  KVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAY
Template Known Secondary structure 
TTT
SS
TT

TT
TT



SSSS
GGG

TT


S

B

BSSS
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   25....30.........40.........50.........60.........70.........80.........90.........100....
 
   104.....110.........120.........130.........140.........150.........160.........170.........180...
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Query Sequence  LGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAI
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Template Sequence  LGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTI
Template Known Secondary structure  SS

B
SSS
BSSSS




SB

BSS




STTB








S
TTTTTTS


TT


B
TTSS
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   105....110.........120.........130.........140.........150.........160.........170.........180....
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  INQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDL
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Template Sequence  LNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDL
Template Known Secondary structure  T

TTT
S

TTTTTTGGGS


SSS
STTTTTTT

S
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   185....190.........200.........210.........220.........230.........240.........250.........260....
 
   264.....270.........280.........290.........300.........310.........320.........330.........340...
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Query Sequence  SKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPT
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Template Sequence  SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLL. . . . . . . . . . . GEGSMTALPIVETQAGDVSAYIPT
Template Known Secondary structure  TT



GGG

S
SSTTTTS
SBB
TTT...........TS

STT
TTS
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   265....270.........280.........290.........300......... 310.........320.........330...
 
   344.....350.........360.........370.........380.........390.........400.........410.........420...
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Query Sequence  NVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQLDH
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Template Sequence  NVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLAR
Template Known Secondary structure  TTSSBB



SSSSTTS
SS


TTT

BTT
GGGS
GGGGGG
SS

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   334.....340.........350.........360.........370.........380.........390.........400.........410...
 
   424.....430.........440.........450.........460.........470.........480.........490.........500...
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Query Sequence  GQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGI
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Template Conservation     
   
 
         

   
     
 
       
                     
     
  
    
   
Template Sequence  GQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEA
Template Known Secondary structure 


TT



TTSSTTS


S

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   414.....420.........430.........440.........450.........460.........470.........480.........490...
 
   504.....510.
Predicted Secondary structure 
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Query Sequence  LDSFKATQ
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Template Conservation 
      
Template Sequence  IQEQMERF
Template Known Secondary structure  TT
Template Predicted Secondary structure 

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   494.....500.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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