Job Description P0ABB0 Confidence 100.00% Date Thu Jan 5 11:15:04 GMT 2012 Rank 9 Aligned Residues 422 % Identity 25% Template c1fx0B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp synthase beta chain; PDBTitle: crystal structure of the chloroplast f1-atpase from spinach Resolution 3.20 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.									.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																						.	.												.	.	.	.	.	.	.	.									.
Query SS confidence																						.	.												.	.	.	.	.	.	.	.									.
Query Sequence		N	E	G	T	I	V	S	V	S	D	G	V	I	R	I	H	G	L	A	D	.	.	C	M	Q	G	E	M	I	S	L	P	G	.	.	.	.	.	.	.	.	N	R	Y	A	I	A	L	N	.	L	E	R	D	S	V	G	A	V	V	M	G	P	Y	A	D	L	A	E	G	M	K	V	K	C	T	G	R	I	L
Query Conservation																						.	.												.	.	.	.	.	.	.	.									.
Alig confidence																						.	.												.	.	.	.	.	.	.	.									.
Template Conservation
Template Sequence		N	L	G	R	I	A	Q	I	I	G	P	V	L	N	V	A	F	P	P	G	K	M	P	N	I	Y	N	A	L	I	V	K	G	R	D	T	A	G	Q	P	M	N	V	T	C	E	V	Q	Q	L	L	G	N	N	R	V	R	A	V	A	M	S	A	T	D	G	L	T	R	G	M	E	V	I	D	T	G	A	P	L
Template Known Secondary structure											T	T								S	S					T	T									S	S	S	S														S	S	S							S	S			T	T			T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	P	V	G	R	G	L	L	G	R	V	V	N	T	L	G	A	P	I	D	G	K	G	P	L	D	H	D	G	F	S	A	V	E	A	I	A	P	G	V	I	E	R	Q	S	V	D	Q	P	V	Q	T	G	Y	K	A	V	D	S	M	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q	T	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	P	V	G	G	P	T	L	G	R	I	F	N	V	L	G	E	P	V	D	N	L	R	P	V	D	T	R	T	T	S	P	I	H	R	S	A	P	A	F	T	Q	L	D	T	K	L	S	I	F	E	T	G	I	K	V	V	N	L	L	A	P	Y	R	R	G	G	K	I	G	L	F	G	G	A	G	V	G	K
Template Known Secondary structure						S	S	T	T	T	T					T	T	S		B		S	S	S	S					S					S							G	G	G											S		T	T					S				T	T									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.								.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure												.																																		.	.	.	.	.	.	.
Query SS confidence												.																																		.	.	.	.	.	.	.
Query Sequence		T	A	L	A	I	D	A	I	I	N	.	Q	R	D	S	G	I	K	C	I	Y	V	A	I	G	Q	K	A	S	T	I	S	N	V	V	R	K	L	E	E	H	G	A	L	.	.	.	.	.	.	.	A	N	T	I	V	V	V	A	T	A	S	E	S	A	A	L	Q	Y	L	A	P	Y	A	G	C	A	M	G	E
Query Conservation												.																																		.	.	.	.	.	.	.
Alig confidence												.																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	L	I	M	E	L	I	N	N	I	A	K	A	H	G	G	V	S	V	F	G	G	V	G	E	R	T	R	E	G	N	D	L	Y	M	E	M	K	E	S	G	V	I	N	E	Q	N	I	A	E	S	K	V	A	L	V	Y	G	Q	M	N	E	P	P	G	A	R	M	R	V	G	L	T	A	L	T	M	A	E
Template Known Secondary structure												T	T	T	T		S	S								S			S													T	T	S	S		S	S	T	T												T	T	S						T	T								T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		248	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		Y	F	R	D	.	R	G	E	D	A	L	I	I	Y	D	D	L	S	K	Q	A	V	A	Y	R	Q	I	S	L	L	L	R	R	P	P	G	R	E	A	F	P	G	D	V	F	Y	L	H	S	R	L	L	E	R	A	A	R	V	N	A	E	Y	V	E	A	F	T	K	G	E	V	K	G	K	T	G	S	L	T	A
Query Conservation						.
Alig confidence						.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	F	R	D	V	N	E	Q	D	V	L	L	F	I	D	N	I	F	R	F	V	Q	A	G	S	E	V	S	A	L	L	G	R	M	P	S	A	V	G	Y	Q	P	T	L	S	T	E	M	G	S	L	Q	E	R	I	T	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	G	S	I	T	S
Template Known Secondary structure				T	T	T	S											S															T					G	G	G			T	T								T	S	S	S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.																.	.	.	320	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		L	P	I	I	E	T	Q	A	G	D	V	S	A	F	V	P	T	N	V	I	S	I	T	D	G	Q	I	F	L	E	T	N	L	F	N	A	G	I	R	P	A	V	N	P	G	I	S	V	S	R	V	G	G	A	.	A	Q	T	K	I	M	K	K	L	S	G	G	I	R	T	A	L	A	Q	Y	R	E	L	A	A
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence		I	Q	A	V	Y	V	P	A	D	D	L	T	D	P	A	P	A	T	T	F	A	H	L	D	A	T	T	V	L	S	R	G	L	A	A	K	G	I	Y	P	A	V	D	P	L	D	S	T	S	T	M	L	Q	P	R	I	V	G	E	E	H	Y	E	I	A	Q	R	V	K	E	T	L	Q	R	Y	K	E	L	Q	D
Template Known Secondary structure								G	G	G		S	S	S								T	T		S					B		S	T	T	T	T	T	T		S	S		B		S	S	S			B	T	T		S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		406	.	.	.	410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.											.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
Predicted Secondary structure								.	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	Q	F	A	S	.	.	D	L	D	D	A	T	R	K	Q	L	D	H	G	Q	K	V	T	E	L	L	K	Q	K	Q	Y	.	.	.	.	.	.	.	.	.	.	A	P	M	S	V	A	Q	Q	S	L	V	L	F	A	A	E	R	G	Y	L	A	D	V	E	L	S	K
Query Conservation								.	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	A	I	L	G	L	D	E	L	S	E	E	D	R	L	T	V	A	R	A	R	K	I	E	R	F	L	S	Q	P	F	F	V	A	E	V	F	T	G	S	P	G	K	Y	V	G	L	A	E	T	I	R	G	F	Q	L	I	L	S	G	E	L	D	S	L	P	E	Q	A
Template Known Secondary structure								S	T	T	S		T	T	T														T					S	S		T	T	T	S		S																T	T	T	T	T	T	T	S	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.