Job Description P39282 Confidence 38.15% Date Thu Jan 5 11:58:52 GMT 2012 Rank 10 Aligned Residues 395 % Identity 12% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.																							.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	K	K	M	S	L	I	G	L	I	L	M	I	F	T	S	V	F	G	F	A	N	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	Y	Y	L	M	G	Y	S	A	I	P	F	Y	I	F	S	A	L	L	F	F	I	P	F	A	L	M	M	A	E	M	G	A
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	P	E	F	S	T	A	S	W	I	F	M	M	F	A	S	C	T	S	A	A	V	L	F	W	G	S	I	E	I	Y	Y	Y	I	S	T	P	P	F	G	L	E	P	N	S	T	G	A	K	E	L	G	L	A	Y	S	L	F	H	W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F
Template Known Secondary structure				S	S											T					S																S		S	T	T			T	T																T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		A	Y	R	K	E	E	G	G	I	Y	S	W	M	N	N	S	V	G	P	R	.	.	F	A	F	I	G	T	F	M	W	F	S	S	Y	I	I	W	M	V	S	T	S	A	K	V	W	V	P	F	S	T	F	L	Y	G	S	D	M	T	Q	H	W	R	I	A	G	L	E	P	T	Q	V	V	G	L	L	A	V	A
Query Conservation																						.	.
Alig confidence																						.	.
Template Conservation
Template Sequence		V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W	L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L
Template Known Secondary structure		T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T	S	T	T				T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		W	M	I	L	V	T	V	V	A	S	K	G	I	N	K	I	A	R	I	T	A	V	G	G	I	A	V	M	C	L	N	L	V	L	L	L	V	S	I	T	I	L	L	.	.	.	L	N	G	G	H	F	A	Q	D	I	N	F	L	A	S	P	N	P	G	Y	Q	S	G	L	A	M	L	S	F	V	V	F	A	I
Query Conservation																																													.	.	.
Alig confidence																																													.	.	.
Template Conservation
Template Sequence		N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L	F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A
Template Known Secondary structure							S	S				T	T																																																T					S	S								T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	Y	G	G	I	E	A	V	G	G	L	V	D	K	T	E	N	P	E	K	N	F	A	K	G	I	V	F	A	A	I	V	I	S	I	G	Y	S	L	A	I	F	L	W	G	V	S	T	N	W	Q	Q	V	L	S	N	G	S	V	N	L	G	N	I	T	Y	V	L	M	K	S	L	G	M	T	L	G	N	A
Query Conservation
Alig confidence																				.																																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	.	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T											T		S	.	S																																			T	T	S								G	G	G			.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	L	S	P	E	A	S	L	S	L	G	V	W	F	A	R	I	T	G	L	S	M	F	L	A	Y	T	G	A	F	F	T	L	C	Y	S	P	L	K	A	I	I	Q	G	T	P	K	A	L	W	P	E	P	M	T	R	L	N	A	M	G	M	P	S	I	A	M	W	M	Q	C	G	L	V	T	V	F	I	L
Query Conservation
Alig confidence		.	.																																																	.	.	.	.	.	.
Template Conservation		.	.																																																	.	.	.	.	.	.
Template Sequence		.	.	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	.	.	.	.	.	.	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V
Template Known Secondary structure		.	.										T	S	S	S	T	T																												T	T	S		S	S	.	.	.	.	.	.	S	S	S		S	S		S	T	T
Template Predicted Secondary structure		.	.																																																	.	.	.	.	.	.
Template SS confidence
				391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.							.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	S	F	G	G	G	T	A	S	A	F	F	N	K	L	T	L	M	A	N	V	S	M	T	L	P	Y	L	F	L	A	L	A	F	P	F	F	K	A	R	Q	D	L	D
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		L	L	A	L	G	G	.	.	.	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure							S	.	.	.	S																																T
Template Predicted Secondary structure								.	.	.
Template SS confidence
		463	.	.	.	.	.				.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.